Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009096 [exp] 47 / 5e-06 AT1G06930 47 / 2e-06 unknown protein Lus10025251 [exp] 47 / 6e-06 AT1G06930 47 / 8e-07 unknown protein Lus10034209 [exp] 40 / 0.0004 AT1G06930 52 / 8e-09 unknown protein Lus10030550 [exp] 40 / 0.001 AT5G01790 50 / 2e-07 unknown protein Lus10022751 [exp] 0 / 1 ND 42 / 5e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107200 [exp] 56 / 4e-09 AT2G40475 49 / 4e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.016G133200 [exp] 54 / 1e-08 AT2G40475 50 / 1e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.013G083101 [exp] 51 / 2e-07 AT2G40475 60 / 3e-11 ALTERED SEED GERMINATION 8, unknown protein Potri.019G127400 [exp] 41 / 0.0004 AT1G06930 / unknown protein Potri.013G156100 [exp] 41 / 0.0005 AT1G06930 / unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014158 pacid=23152906 polypeptide=Lus10014158 locus=Lus10014158.g ID=Lus10014158.BGIv1.0 annot-version=v1.0 ATGTTCGGCAGCGGACGTCGCCGGACCAGTACCACCACCAGCAGTAGTACTACTAACTCCGACGAAATTGACCATCATCACCATCCATTAATCCTAACCG GCCCCAACCTCCAGATCGACGACGTCGACAAATTCTACAGCCGTCTCCTCTCCAGGGACTACAACGACGAAGACGAAGAAAACAACCGCCACTCCTCCTC CGGCATCGCCGTCGCTGTCCCGTTCACCTGGGAATCCGAGCCCGGCACTCCCAAACACTCCTTCTACTCTGACCCCATCCTCCCTCCACTGACCCCTCCT CCTTCCTACTTCTCCACCACCGCACACGTCAACGTCCGCCATAAGGACTTCTCCTCCTCCTTCTCCTCCGCCGCCACCAGACGCCAGCTTCCGCCACGTG ATCAGCTAGTGACCACCGACGCCAAACACAACAACAACCGTCACTTCCTCCGCTCGTTGGTGAGCTTCCTCAAGAAACGCAACCCCTCCTCCTCCTCCTC TTCCGCCACGTCAGCCGAGTCCGGCGACTATCAGCTGTCGCCGGCTCTCGCGTCGCCCGCTTCCACGCTTTGCTTTGGAGGGAACGGCCGCCGGCGCCGG CGCCCTCGTGATCGAAGGCACGTTCGTGGAAATAGGCGGAAATTTCATTTTGAGCGGCCGTCGGATCTGGCACCTGGCACCTGTAACTGGTTTTGGCTGC ACCTGGCTCTGTTTTCGAATCCTGCACAGTCTCCCGATCCGTCGTTGCACGAGCTTACCGCTGACATCATCATCATCGTTGTTACTGCTGCTGCTGCGAT GGTCAGAAATATGGCCGCCATTGTTGTATGGGTTCGGTGGAGCTGCTAG
AA sequence Show only first row Show all	>Lus10014158 pacid=23152906 polypeptide=Lus10014158 locus=Lus10014158.g ID=Lus10014158.BGIv1.0 annot-version=v1.0 MFGSGRRRTSTTTSSSTTNSDEIDHHHHPLILTGPNLQIDDVDKFYSRLLSRDYNDEDEENNRHSSSGIAVAVPFTWESEPGTPKHSFYSDPILPPLTPP PSYFSTTAHVNVRHKDFSSSFSSAATRRQLPPRDQLVTTDAKHNNNRHFLRSLVSFLKKRNPSSSSSSATSAESGDYQLSPALASPASTLCFGGNGRRRR RPRDRRHVRGNRRKFHFERPSDLAPGTCNWFWLHLALFSNPAQSPDPSLHELTADIIIIVVTAAAAMVRNMAAIVVWVRWSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06930			unknown protein		Lus10014158 [exp]	0	1
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10016139 [exp]	13.2	0.8764
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10022130 [exp]	15.0	0.8736
					Lus10010382 [exp]	15.7	0.7748
AT3G11780			MD-2-related lipid recognition...		Lus10021256 [exp]	20.8	0.8721
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10023002 [exp]	28.1	0.8696
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10011679 [exp]	35.2	0.8652
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	36.1	0.8655
AT2G40370		LAC5	laccase 5 (.1)		Lus10007531 [exp]	38.3	0.8542
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10042334 [exp]	38.9	0.8085
AT1G48930		ATGH9C1	glycosyl hydrolase 9C1 (.1)		Lus10010201 [exp]	41.4	0.8094

Compare expression of checked genes

Lus10014158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.