Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10400 62 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G18150 60 / 1e-09 RNI-like superfamily protein (.1) AT5G02920 59 / 1e-09 F-box/RNI-like superfamily protein (.1) AT5G53840 58 / 6e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G60610 56 / 1e-08 F-box/RNI-like superfamily protein (.1) AT1G16930 56 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G09920 55 / 3e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT3G59000 55 / 5e-08 F-box/RNI-like superfamily protein (.1.2) AT3G49030 55 / 5e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) AT1G55660 55 / 5e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014229 [exp] 260 / 5e-85 ND / Lus10035564 [exp] 244 / 2e-78 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4) Lus10029433 [exp] 245 / 5e-78 AT3G18150 79 / 8e-16 RNI-like superfamily protein (.1) Lus10006513 [exp] 198 / 6e-60 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10027258 [exp] 182 / 2e-54 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1) Lus10038967 [exp] 184 / 1e-52 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10027244 [exp] 175 / 1e-50 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10032255 [exp] 171 / 1e-49 AT5G02930 85 / 6e-18 F-box/RNI-like superfamily protein (.1) Lus10024702 [exp] 162 / 1e-46 AT5G02930 70 / 5e-13 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337200 [exp] 94 / 2e-21 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002100 [exp] 91 / 4e-20 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G104300 [exp] 76 / 7e-15 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 74 / 2e-14 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G011200 [exp] 71 / 2e-13 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104200 [exp] 67 / 3e-12 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G002001 [exp] 62 / 1e-10 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.001G322900 [exp] 61 / 7e-10 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G042900 [exp] 53 / 2e-07 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G024300 [exp] 53 / 2e-07 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10014161 pacid=23152901 polypeptide=Lus10014161 locus=Lus10014161.g ID=Lus10014161.BGIv1.0 annot-version=v1.0 ATGGAAGGAACGGGTAGACTGACCGCTATTCTTAACGATATTTTGCATCACAACACCACCAGCGGTTTCTCTGAGAAACCAACCTCTGTAAGGAAAAGGC CTTTGATTCCACGGGAAGAAGGTAAAGTCAATCATTATCATAATTCTATGCATAGCGGAAATGTGTCTTCTTCTCCTACGAAAAGAAGAAAGACGATGAA GATTACTCAGGACAGAAGAATTGATGATAGACTGAGTGACCTCCCTGACCAGCGGCCAAACAACAACACCGGCGGTTTCTCTGAGAAACCAAACGCCGTA AGGAAAATGCCTTTGATTCCACGGGAAGAAGGTAAAGCCAATCATTATAAAAAATTTATGCTTGTTGGAAATTCGTCTTCTTCCTCTTCTACGAAAAGAA GAAAGACGATTATGATTCAGGACAGAAGAATTGATAGACTGAGTGCTCTTCCTGATGATATTTTGCATCACGTTCTCTCCTTTCTCGACACTAAATCTTC CGTTCAAACCTGCATTTTGTCTAAGAGGTGGACATCCCTATGGAAATATGTTCACGTTCTCACTTTCGATAGCTTCTCCTTCTGCTCTGCTCGGAGTTTC GAGCAGCACACGGACCGAGTTCTTTCCCTCCGTTCCGATAGCAGTAGCATTAGCATGGTTGCTGCCGACCTGGTGTTAGCAGACCCAGAGAGGATGGATC TGTTGGACAGGATCATGAAATATGCTGCTTCCCATGGCGTTCAAGAGCTATTCATTTGTCCTGCTGGTTTGGGCAGCTTTCCGGATCTCTTCCGATCGAT ATACGCCTGTCATCAGTCCCTGAAATTTCTGGAGTTGGACTCAACATTTTTTCGAGAGGCTTATGGTGAATTGTGGTCTTGTTTGCAAATGCTTGAATCT CTTACTCTGACTGCATGTGACCTTAATTTGGGTGATGATGCCTTTGGCAATTTGCCCAGATTAGAGAGCCTAAAGCTGATCAAGTGTAGTCCTTGTTTCG GGGGGACTCTGAAAGTAATTGGTCCCAAACTGCTTAACTTGGAGATTGATTCGTGGCAATTCACCAGTCTTGAAATAGTCGTTCCCAAACTTCAATCTTT CACTCTTAAGATTGGTGATTTATGTAAAATAAAAGACTGTGTCCGGCTCGAATCTTCCTTCCCTTAA
AA sequence Show only first row Show all	>Lus10014161 pacid=23152901 polypeptide=Lus10014161 locus=Lus10014161.g ID=Lus10014161.BGIv1.0 annot-version=v1.0 MEGTGRLTAILNDILHHNTTSGFSEKPTSVRKRPLIPREEGKVNHYHNSMHSGNVSSSPTKRRKTMKITQDRRIDDRLSDLPDQRPNNNTGGFSEKPNAV RKMPLIPREEGKANHYKKFMLVGNSSSSSSTKRRKTIMIQDRRIDRLSALPDDILHHVLSFLDTKSSVQTCILSKRWTSLWKYVHVLTFDSFSFCSARSF EQHTDRVLSLRSDSSSISMVAADLVLADPERMDLLDRIMKYAASHGVQELFICPAGLGSFPDLFRSIYACHQSLKFLELDSTFFREAYGELWSCLQMLES LTLTACDLNLGDDAFGNLPRLESLKLIKCSPCFGGTLKVIGPKLLNLEIDSWQFTSLEIVVPKLQSFTLKIGDLCKIKDCVRLESSFP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10014161 [exp]	0	1
AT1G01920			SET domain-containing protein ...		Lus10016435 [exp]	2.8	0.6995
AT1G76280			Tetratricopeptide repeat (TPR)...		Lus10001597 [exp]	4.2	0.6635
AT2G22600			RNA-binding KH domain-containi...		Lus10002662 [exp]	5.8	0.7092
AT2G44525			Protein of unknown function (D...		Lus10007558 [exp]	6.0	0.6339
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Lus10004417 [exp]	6.9	0.6050
AT3G23330			Tetratricopeptide repeat (TPR)...		Lus10019350 [exp]	14.4	0.6544
AT4G34770			SAUR-like auxin-responsive pro...		Lus10042376 [exp]	27.5	0.6329
					Lus10005512 [exp]	32.2	0.5819
AT2G32360			Ubiquitin-like superfamily pro...		Lus10039658 [exp]	35.7	0.5487
AT3G06240			F-box family protein (.1)		Lus10011015 [exp]	38.2	0.5907

Compare expression of checked genes

Lus10014161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.