Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01800 160 / 7e-48 saposin B domain-containing protein (.1) AT3G51730 157 / 7e-47 saposin B domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022750 [exp] 355 / 5e-123 AT5G01800 184 / 2e-57 saposin B domain-containing protein (.1) Lus10025248 [exp] 214 / 2e-68 AT3G51730 209 / 3e-68 saposin B domain-containing protein (.1) Lus10009099 [exp] 225 / 2e-67 AT2G38370 340 / 1e-107 Plant protein of unknown function (DUF827) (.1) Lus10029433 [exp] 42 / 0.0003 AT3G18150 79 / 8e-16 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107300 [exp] 196 / 1e-61 AT3G51730 182 / 9e-58 saposin B domain-containing protein (.1) Potri.016G133400 [exp] 185 / 2e-57 AT3G51730 178 / 5e-56 saposin B domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03489 [flax] [poplar] SapB_2 Saposin-like type B, region 2 PF05184 [flax] [poplar] SapB_1 Saposin-like type B, region 1
Representative CDS sequence Show only first row Show all	>Lus10014162 pacid=23152889 polypeptide=Lus10014162 locus=Lus10014162.g ID=Lus10014162.BGIv1.0 annot-version=v1.0 ATGGACAATGTTGCCTACAAGCAATTAGGAGTGGTCAAGCCGTGTATGAACTTGTTCAAGATTCTGCATAATGTACAAGCTCTCGATCTGTATGTTGAAA ACCTTGAGGAATGGTTAATGGCCGGAAAACCGAAATTAGAACTTTCCAACCATTATGATACAAAGCCTGCACTCAAATCAGAAGTTTATGTTGAGTCGAA GGCTCAGTCAGATTCAAGGTTCCCATCCGTTTTCGGTCAGAGGGATGATTCTGGTCATCCTTTTGTTTATGTTTGTTTTTGCTCTCCTGCTGTCGCTAGC CTTGTTTGTGGTAAATTGACCATCTCATCTATTTCTGAACACTTGTTTGATTTTGCACATGTGATAGGGGGAAATCAGGGGCAAGGAAGTGGAATTCCTG CTTCTGAAATGGGTATGGAGGACCAAATGTGCACATTCTGCCAGCAGTTTAGTCGTCAGGCTCTTAGATACCTTAAGGATAACGAAACTCGGACCGAGAT TGTCGAGTTCCTTCACAGAACGTGTTCTTACGTCCCTTACGTGAAGAAAGAGTGCCTTAGTGTGGTGGACTATTATGTTCCTCTTTTCTTCTCGCAAGTT TCTGCTATTCGACCGGATGATTTGTGCCGAAAGATTAGCTTTTGTCACGAGGGTGCAACAACCATTGCCTCCAAAGTTCAAGAAAACACATGTGGAATCT GCCATCACACTGTTTCTGAAGTGCTGGCCAAATTGAAAGATCCCGAAATTCAGTTGGAGATAATCGAGCTGCTCTTGAAGGGCTGCAATTCGTTGGATAG TCGTAAAGCACAGTGCAAGAAGATTGTATTCGAGTACGGTCCTTTGGTCCTTACGAATGCAGAACAGTTCCTGGAGAAAACCGACATATGCGCTGCTCTA CATGCTTGCAACAAGGACGCTTCGCCAATTGGCGTGGCTGAATCCTGA
AA sequence Show only first row Show all	>Lus10014162 pacid=23152889 polypeptide=Lus10014162 locus=Lus10014162.g ID=Lus10014162.BGIv1.0 annot-version=v1.0 MDNVAYKQLGVVKPCMNLFKILHNVQALDLYVENLEEWLMAGKPKLELSNHYDTKPALKSEVYVESKAQSDSRFPSVFGQRDDSGHPFVYVCFCSPAVAS LVCGKLTISSISEHLFDFAHVIGGNQGQGSGIPASEMGMEDQMCTFCQQFSRQALRYLKDNETRTEIVEFLHRTCSYVPYVKKECLSVVDYYVPLFFSQV SAIRPDDLCRKISFCHEGATTIASKVQENTCGICHHTVSEVLAKLKDPEIQLEIIELLLKGCNSLDSRKAQCKKIVFEYGPLVLTNAEQFLEKTDICAAL HACNKDASPIGVAES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01800			saposin B domain-containing pr...		Lus10014162 [exp]	0	1
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10028867 [exp]	1.0	0.9147
AT1G04960			Protein of unknown function (D...		Lus10033807 [exp]	3.2	0.8690
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10008964 [exp]	4.0	0.8827
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10012211 [exp]	6.0	0.8991
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10018445 [exp]	6.7	0.8615
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10002491 [exp]	8.1	0.8975
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10003994 [exp]	8.4	0.8576
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10028347 [exp]	15.3	0.8264
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10035419 [exp]	17.3	0.8281
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10037660 [exp]	17.9	0.8641

Compare expression of checked genes

Lus10014162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.