Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58380 511 / 1e-179 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G45820 499 / 9e-176 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G07070 498 / 4e-175 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT5G01810 496 / 8e-175 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT5G25110 440 / 8e-152 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT5G10930 434 / 7e-150 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT5G45810 431 / 2e-148 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT4G18700 431 / 4e-148 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT4G30960 427 / 4e-147 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT1G30270 422 / 1e-144 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022749 [exp] 754 / 0 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10042229 [exp] 528 / 0 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 461 / 4e-160 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10021852 [exp] 447 / 5e-155 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 444 / 6e-154 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10024448 [exp] 443 / 6e-153 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10007448 [exp] 439 / 1e-151 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10008582 [exp] 437 / 1e-151 AT5G58380 570 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10029054 [exp] 429 / 3e-148 AT5G58380 483 / 4e-169 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133500 [exp] 587 / 0 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 525 / 0 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 516 / 0 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 508 / 5e-179 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 501 / 5e-176 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.006G186200 [exp] 460 / 2e-160 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.006G263500 [exp] 459 / 8e-160 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.018G108500 [exp] 443 / 9e-154 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G019900 [exp] 438 / 1e-151 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Potri.003G181900 [exp] 424 / 1e-145 AT5G25110 460 / 2e-159 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10014163 pacid=23152915 polypeptide=Lus10014163 locus=Lus10014163.g ID=Lus10014163.BGIv1.0 annot-version=v1.0 ATGGAGCAGAAGGGATGCGTGTTGATGAACAAGTATGAGATTGGGAGGTTGTTAGGTCAAGGGACCTTTGCCAAGGTTCACTACGCTAGGAATCTGGAGA ATGGTACAAGTGTGGCTATCAAGATCATTGATAAGGAGAAAGTGTTGAAAGTCGGAATGATGGACCAGATCAAGCGGGAGATTTCGATAATGAGACTGAT CCGCCATCCGAACGTGGTGGAGCTTTACGAGGTTCTGGCAACCAAGACGAAGATTTACTTCGTCATGGAGTATGTCAAAGGCGGCGAGCTCTTCAATAGA GTCGCCAAGGGGAAAGTGAATCCTGATGTTGCGAGGAAGTACTTCCAGCAGCTGATTAGCGCAGTCGATTACTGCCATAGCCGTGGGGTTAGCCATCGCG ATTTGAAGCCGGAGAATCTCCTTCTGGACGAAGAGGAGAATTTGAAAGTCACGGATTTTGGACTCAGCGCTCTTGCCGATTGCAAGAGGCAGGATGGATT GCTCCACACGACGTGTGGAACTCCTGCGTATGTTGCTCCGGAAGTTATCGTGAGAAAAGGATACGATGGATCGAAAGCCGACATTTGGTCCTGTGGAGTT ATCTTGTATGTTCTGCTTGCTGGATATTTGCCTTTCCATGACTCCAATCTTATGGAGCTTTATAGGAAGATTATGAAGGGGGAGTTCAGGATTCCAAACT GGTTCTCGTACGATGTTCGGAGGTTTTTGTCGAAAATCATGGATCCGAATCCGAGCAAGAGGATCACCATTGCTAAGATAATGCAGAACTCGTGGTTTCG GAAAGGACTAGTCGAGCCGAACAAGCAGACTGATTTACTCGAGACGGTTGAATCGGAATTGTTGGATTCGAAGAGTTGTAGTAACCTGAACGCATTCGAT ATAATTTCATATTCGTCTGGATTCGATTTGTCAGGGCTGTTCGAAGAGAAGGGGGAGAAGAAAGAGGTGACGTTTACTTCGAACAGTACGGCTTCTACTA TTATCTCGAGAGTCGAGGAGGTGGCGAAACGGCTAAAGCTGAGGGTGAAGAAGAAGGAAGGAGGGCTGATGAGATTGGAAGGTGGGAGGGAAGGGAGGAA AGGTGTGATTGGGATCGAAGCTGAGATTTTCGAGATAAGTCCGTGCTTCCATTTGGTGGAGATGAAGAAGTGCAGTGGGGATACGATGGAGTATCGGAAA GTGGTTAAGGAAGAGATTCGGCCTTCGTTGAAGGATATTGTGTGGAGTTGGCAAGGAGAACAGCAGCAACAGCAGCAGCAGCTTCCTGTTTCGAATGTGT TGTCAGAAATCACGGCTCAGATAAAACCATTGAACCTGACAGAAGCTGATGATCATCATTCTGTTTGA
AA sequence Show only first row Show all	>Lus10014163 pacid=23152915 polypeptide=Lus10014163 locus=Lus10014163.g ID=Lus10014163.BGIv1.0 annot-version=v1.0 MEQKGCVLMNKYEIGRLLGQGTFAKVHYARNLENGTSVAIKIIDKEKVLKVGMMDQIKREISIMRLIRHPNVVELYEVLATKTKIYFVMEYVKGGELFNR VAKGKVNPDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDEEENLKVTDFGLSALADCKRQDGLLHTTCGTPAYVAPEVIVRKGYDGSKADIWSCGV ILYVLLAGYLPFHDSNLMELYRKIMKGEFRIPNWFSYDVRRFLSKIMDPNPSKRITIAKIMQNSWFRKGLVEPNKQTDLLETVESELLDSKSCSNLNAFD IISYSSGFDLSGLFEEKGEKKEVTFTSNSTASTIISRVEEVAKRLKLRVKKKEGGLMRLEGGREGRKGVIGIEAEIFEISPCFHLVEMKKCSGDTMEYRK VVKEEIRPSLKDIVWSWQGEQQQQQQQLPVSNVLSEITAQIKPLNLTEADDHHSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10014163 [exp]	0	1
AT5G48290			Heavy metal transport/detoxifi...		Lus10025181 [exp]	1.0	0.9733
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10024263 [exp]	1.4	0.9666
AT2G17080			Arabidopsis protein of unknown...		Lus10012368 [exp]	2.8	0.9362
AT5G48290			Heavy metal transport/detoxifi...		Lus10016061 [exp]	3.0	0.9545
AT4G02410			Concanavalin A-like lectin pro...		Lus10033777 [exp]	3.9	0.9002
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10001902 [exp]	4.9	0.9231
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10017861 [exp]	4.9	0.9200
AT4G33780			unknown protein		Lus10037250 [exp]	5.3	0.9223
AT1G53400			Ubiquitin domain-containing pr...		Lus10029264 [exp]	6.2	0.8936
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10040069 [exp]	6.3	0.9291

Compare expression of checked genes

Lus10014163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.