Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51630 596 / 0 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G58350 516 / 8e-178 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT3G48260 457 / 6e-156 WNK3 with no lysine (K) kinase 3 (.1) AT3G22420 448 / 2e-151 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT3G18750 423 / 1e-141 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT1G49160 417 / 1e-139 WNK7 Protein kinase superfamily protein (.1.2) AT3G04910 411 / 3e-135 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT5G28080 404 / 3e-135 WNK9 Protein kinase superfamily protein (.1.2) AT5G41990 387 / 7e-128 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 368 / 6e-121 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022747 [exp] 977 / 0 AT3G51630 597 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10008590 [exp] 551 / 0 AT5G58350 624 / 0.0 with no lysine (K) kinase 4 (.1) Lus10042223 [exp] 549 / 0 AT5G58350 630 / 0.0 with no lysine (K) kinase 4 (.1) Lus10024192 [exp] 518 / 4e-180 AT5G58350 540 / 0.0 with no lysine (K) kinase 4 (.1) Lus10009921 [exp] 517 / 2e-179 AT5G58350 545 / 0.0 with no lysine (K) kinase 4 (.1) Lus10004904 [exp] 474 / 4e-160 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) Lus10010547 [exp] 473 / 5e-160 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10041947 [exp] 444 / 2e-149 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10017957 [exp] 448 / 5e-146 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G134600 [exp] 677 / 0 AT3G51630 591 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Potri.013G155100 [exp] 595 / 0 AT5G58350 689 / 0.0 with no lysine (K) kinase 4 (.1) Potri.019G128600 [exp] 571 / 0 AT5G58350 662 / 0.0 with no lysine (K) kinase 4 (.1) Potri.012G086700 [exp] 447 / 7e-151 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.015G084600 [exp] 447 / 9e-151 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.003G145300 [exp] 413 / 2e-137 AT5G41990 609 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.005G049800 [exp] 417 / 4e-137 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 417 / 6e-137 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.005G057300 [exp] 413 / 2e-136 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G101500 [exp] 413 / 2e-136 AT3G18750 564 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10014165 pacid=23152850 polypeptide=Lus10014165 locus=Lus10014165.g ID=Lus10014165.BGIv1.0 annot-version=v1.0 ATGCACAATTCTAAGCTGCTGATGATGCAACACCATGGATACGCTGAGACTGACCCTTCTGGTAGATACGGCCGTTTCAAGGATGTTCTTGGGAAAGGAG CAATGAAGACTGTGTACAAGGCATTCGACGAGGTACTTGGAATGGAGGTAGCATGGAATCAAGTGAAGCTCAACGATGTATTTCGCTCGCCTGATGATTT GCAGAGGCTCTACTCAGAAGTTCATCTCCTGAAGAATCTGAAGCACGAATCCATCATCAAGTTCTACGCTTCCTGGATCGACAGTACTCAAAGGACGTTC AACTTCATCACTGAGATGTTCACCTCCGGCACCCTACGAGAGTACAGAAAGAAGTACCAGAGAGTAGATATCCGAGCAGTGAAGAACTGGTCGAGGCAAA TCCTGCATGGACTTGTTTATTTGCACGGCCATGACCCGCCCGTGATCCATAGGGATCTCAAAGGTGATAACATCTTCATCAACGGCCATCTGGGACAGGT CAAGATTGGCGACTTGGGATTAGCAGCGATTCTTCGAGACTCACAACACGCGCATAGTGTCATAGGTACTCCTGAGTTCATGGCACCTGAACTATACGAA GAAGAGTACAACGAGCTCGTAGATGTATACTCATTCGGGATGTGTGTTCTGGAGATGCTAACTTCTGAGTATCCCTACAGCGAATGCTCGAATCCCGCTC AAATCTACAAGAAAGTGACATCGGGGAAGCTGCCCGAGGCGTTCCACAAGATCAAGGATGCTGAAGCGAAGAAGTTTGTCGGGAAATGTCTCGAGCCTGC TTCGAAGAGATTAACAGCTAAAGAGCTACTCTTGGAACCGTTTTTAGCACTTGGTGATGAACCAGAATTGCTACCAGTCTCAAAGTTTTCGTCTTTTCGA AGCTCCCCGGCTTCTAGCTGTGGAAGTGAGGAGATGATGATGACGACAATGATGATGATGATGCCTTCTTTGCAGGATGATCATCCTGAAACTACGGATA TGACGATTACAGGAACTCTGAACCCTGAACATGACACTGTTTTCCTCAAAGTCCAGATTTCTGACTGCAGTGGGCATACCAAGAACATACATTTCCCCTT TGACATAACTGGAGACACAGCGATCGATGTTGCGATGGAAATGGTGAAAGAGCTGGAGATCAGTGACTTGGAACCGATCACCATCGCCAAGATGATAGAA GACGAGATATCTTCTTTAGTTCCGACATGGAAACAACAAGGAACCTTCATTTTCCACCAGCAGCAGCATAGCTTCAGCTACGTGGATGATGAAGAAGAGG AAGAAGAAGAAGAAGAAGAAATCGGCCACCAGGAAAACTCGGAACGAATCCATCATCCGTTCTACTCCACTTCGCCTTCCTCCGATGCTTCATCCTCCGA CAGGGCTTCTCTATTGGCCTTCAACAGCTCCTCCTCCGAAAGTCCACGTTATGAAGATTGCACTACACCAATAGTCACTTTAGGGAAGCTGCTACAAGAT GAAGCAGATGACTTGAGTTCAGAGAGCTCTTACAACTACTCAACAGTCTCTTACTGCTCTGGAAATGAAGACGAGCATAATCGGCAAGAAGAACAATCTA CAGCTAACGTTGACCAGTCGGAAAGCTGTGAAGGAGGAGGGTGCAGGATAATACCACCGGGGAGGAGAAAGAAGCTGAGCCGGATACGATCGGTGTTGGA TATGAGAAGCCAGTTGCTGAACCGGTCGTGGGTGCAAGAGATGAACAAGAAGCGTTTGTTCAAGACTGTGGGAGCTGTTGAGAACATTGGATATCATAAC TGGAACCCTTCTGCTTCTTCCTCATGA
AA sequence Show only first row Show all	>Lus10014165 pacid=23152850 polypeptide=Lus10014165 locus=Lus10014165.g ID=Lus10014165.BGIv1.0 annot-version=v1.0 MHNSKLLMMQHHGYAETDPSGRYGRFKDVLGKGAMKTVYKAFDEVLGMEVAWNQVKLNDVFRSPDDLQRLYSEVHLLKNLKHESIIKFYASWIDSTQRTF NFITEMFTSGTLREYRKKYQRVDIRAVKNWSRQILHGLVYLHGHDPPVIHRDLKGDNIFINGHLGQVKIGDLGLAAILRDSQHAHSVIGTPEFMAPELYE EEYNELVDVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPEAFHKIKDAEAKKFVGKCLEPASKRLTAKELLLEPFLALGDEPELLPVSKFSSFR SSPASSCGSEEMMMTTMMMMMPSLQDDHPETTDMTITGTLNPEHDTVFLKVQISDCSGHTKNIHFPFDITGDTAIDVAMEMVKELEISDLEPITIAKMIE DEISSLVPTWKQQGTFIFHQQQHSFSYVDDEEEEEEEEEEIGHQENSERIHHPFYSTSPSSDASSSDRASLLAFNSSSSESPRYEDCTTPIVTLGKLLQD EADDLSSESSYNYSTVSYCSGNEDEHNRQEEQSTANVDQSESCEGGGCRIIPPGRRKKLSRIRSVLDMRSQLLNRSWVQEMNKKRLFKTVGAVENIGYHN WNPSASSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10014165 [exp]	0	1
AT3G09760			RING/U-box superfamily protein...		Lus10019931 [exp]	1.0	0.9371
AT4G29890			choline monooxygenase, putativ...		Lus10008571 [exp]	11.0	0.9215
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017705 [exp]	14.5	0.9087
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10002329 [exp]	16.2	0.8936
AT1G76360			Protein kinase superfamily pro...		Lus10030743 [exp]	23.1	0.9004
					Lus10017210 [exp]	24.9	0.9087
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10022747 [exp]	26.1	0.8663
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10025681 [exp]	26.5	0.8989
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10010580 [exp]	27.8	0.9120
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10020610 [exp]	27.9	0.8728

Compare expression of checked genes

Lus10014165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.