Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51620 525 / 3e-178 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G56320 266 / 2e-80 PAP/OAS1 substrate-binding domain superfamily (.1) AT3G61690 276 / 7e-80 nucleotidyltransferases (.1) AT2G40520 228 / 2e-67 Nucleotidyltransferase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022746 [exp] 1157 / 0 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006095 [exp] 678 / 0 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 676 / 0 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10000115 [exp] 377 / 7e-129 AT3G51620 124 / 5e-33 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10030266 [exp] 284 / 9e-88 AT3G61690 640 / 0.0 nucleotidyltransferases (.1) Lus10006094 [exp] 281 / 2e-86 AT3G51620 259 / 6e-77 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10004018 [exp] 286 / 2e-83 AT3G61690 1098 / 0.0 nucleotidyltransferases (.1) Lus10030265 [exp] 281 / 2e-81 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10012885 [exp] 264 / 6e-80 AT3G51620 297 / 5e-93 PAP/OAS1 substrate-binding domain superfamily (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154900 [exp] 361 / 3e-114 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.019G128800 [exp] 332 / 2e-103 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.015G020400 [exp] 298 / 8e-88 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.019G056800 [exp] 285 / 1e-86 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.012G000900 [exp] 289 / 2e-84 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.002G169732 [exp] 280 / 3e-81 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.014G097600 [exp] 278 / 1e-80 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.011G116501 [exp] 77 / 2e-16 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014166 pacid=23152854 polypeptide=Lus10014166 locus=Lus10014166.g ID=Lus10014166.BGIv1.0 annot-version=v1.0 ATGGGAGATCTTCGACCGTGGTCACCGGAACTTAATGGCGACGTTCTCGAGGAAAGGCCGTCGTCGTCTTCTTCTTCTTTTTCTTCGTTATCATCGCCGC CGCTGACGATTGATGCGGCGAACTGGAAGATTGCTGAGGCTGCGACGCAGCTTATCATAGCGAAAGTTCAGCCTACTAATGTCTCGGAGGAGAGGAGAAA AGCTGTTGTTGATTACGTCCAGCGTCTGATTAGAAATTCCATTGGCTGCGAGGTGCTCCCTTTTGGGTCAGTGCCATTGAAAACTTATCTTCCTGATGGG GATATCGATTTGACGGCCTTTGGTGGTCTGAATATGGTGGAATCACTTGCCAATGATGTGCGATCGATCCTTGAGTTGGAAGATCATAACAAGGCTGCAG AGTTTGTTGTAAAAGATGTGCAATTGATTAGGGCGGAGGTTAAGCTCGTAAAATGCCTGGTGCAGAACATTGTTGTTGATATTTCCTTTAACCAATTAGG AGGTCTCTGTACTCTATGCTTTCTTGAGGAGGTTTTGTATAAATTTCTAGACTATTTTAGCAAATTTGACTGGGAAAACTACTGCATTAGTTTGAATGGC CCAGTCCGAATATCCTCATTGCCAGAAGTTGTAGTTGATGTCGCTGACCATGGTGGATGTGATCTACTGCTCAGTCATGAGTTTATCAAAAAGTGCGTAG ACAGGTTTTCTGTTCCTTTTAGAGGATCTGAGACAAACTCACGTATGTTTCCAACGAAGCATCTCAACATTGTTGATCCCTTGAAAGAAAACAATAACCT TGGTCGGAGCGTGAGCAAAGGGAATTTCTACCGGATAAAAACTGCTTTCAGCTATGGAGCTCGAAAGCTCGGGCTGATTCTTTCGCAGCGAGAAGAAAAT GTAGCTGATGAACTCTGCGGGTTTTTTTCCAACACTCTAGATAGACATGGCAATGGTCAAAGACCTGATGTTCAAGATCCTTTACCCATGGATGGACACC ATGGACACAGTACCAGGTCAGCATCTTCAGGTACAGAAACTGGCCAAGACCACCAGAGAAATTCTGAAGCAAGTGGCAACAATGGCATCAGTGTTAAGTT ATCAGATATGGGAGCGAAATGCAGCAAAGACACCACTGAAGCAGGCAAAATGGAAAATGGTAGTTTGTTTTCTCACCACTGTCTTTCCGGTGATGCAGAA GATCCGGCATCTGCTAGAATTCAACACCTTTCCATTTCCGGCAATGGACTGATACATTCTAGTACAAAAACTGAGAGCCCCAGGCAAGAAGTGCAACTAC GTCATGCACCAGATCTCAATTTCACTGGTGACCATGTTATGTTGTCCCCTGTTGGATCATCAGTTGGATTTCCTTCTGAAAATCATCAACCTGGTCATTG TAGTGCTGGAAACTTCGATGCCCTAGACTCTCTTTCAGATCTCAGAGGTGATTATGAAGCTCACCTCCTTAGTTTGAGCCATGGCCGGTGGTGCTACGAA TACATACCAACTTCTCCAGTTCCGCCTATATCTCCCGTAATGTTCAGTCCGGTCCAGAACAAAAATTATTGGGACGGAACGAGACGACCGGCTCATTACA GGCAGAATCTCAATGGAGTGAGTCCGAGGCCCGTGCTCAATTCGATCAATCCACCCTTTCTGCACGGTCCAATGTTTGCTATAGAAGAGGGATCGAAGCA ACGAGGAACCGGGACATACTTCCCAAAAGTGAACCATTACAGGGACAAGTCTTTGACGCTAAGGGGAAGTAGTCAGGTGTCACTACGTCCTCCTTGTACC AATGGCCGTATCGCTACTTCTCAGGAGCCTAACTTTTCAGAAAGAAGCAGAGGGCAGCTATGTCCAGATTCTGCTGTTGGACCGGATACACTGCAGTCAA AACCTCCAGCCATTGAAAGGTAG
AA sequence Show only first row Show all	>Lus10014166 pacid=23152854 polypeptide=Lus10014166 locus=Lus10014166.g ID=Lus10014166.BGIv1.0 annot-version=v1.0 MGDLRPWSPELNGDVLEERPSSSSSSFSSLSSPPLTIDAANWKIAEAATQLIIAKVQPTNVSEERRKAVVDYVQRLIRNSIGCEVLPFGSVPLKTYLPDG DIDLTAFGGLNMVESLANDVRSILELEDHNKAAEFVVKDVQLIRAEVKLVKCLVQNIVVDISFNQLGGLCTLCFLEEVLYKFLDYFSKFDWENYCISLNG PVRISSLPEVVVDVADHGGCDLLLSHEFIKKCVDRFSVPFRGSETNSRMFPTKHLNIVDPLKENNNLGRSVSKGNFYRIKTAFSYGARKLGLILSQREEN VADELCGFFSNTLDRHGNGQRPDVQDPLPMDGHHGHSTRSASSGTETGQDHQRNSEASGNNGISVKLSDMGAKCSKDTTEAGKMENGSLFSHHCLSGDAE DPASARIQHLSISGNGLIHSSTKTESPRQEVQLRHAPDLNFTGDHVMLSPVGSSVGFPSENHQPGHCSAGNFDALDSLSDLRGDYEAHLLSLSHGRWCYE YIPTSPVPPISPVMFSPVQNKNYWDGTRRPAHYRQNLNGVSPRPVLNSINPPFLHGPMFAIEEGSKQRGTGTYFPKVNHYRDKSLTLRGSSQVSLRPPCT NGRIATSQEPNFSERSRGQLCPDSAVGPDTLQSKPPAIER

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10014166 [exp]	0	1
AT1G58230			binding (.1)		Lus10042867 [exp]	8.7	0.9296
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10041413 [exp]	8.9	0.9242
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10023504 [exp]	11.2	0.9214
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	11.5	0.9272
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10036515 [exp]	12.0	0.9004
AT3G12010			unknown protein		Lus10017227 [exp]	12.2	0.8773
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10008796 [exp]	12.7	0.9279
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10040386 [exp]	14.1	0.9119
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10032516 [exp]	15.5	0.8936
					Lus10007204 [exp]	16.4	0.9233

Compare expression of checked genes

Lus10014166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.