Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08760 568 / 0 ATSIK Protein kinase superfamily protein (.1) AT3G55450 214 / 9e-64 PBL1 PBS1-like 1 (.1.2) AT3G09830 213 / 2e-63 Protein kinase superfamily protein (.1.2) AT5G15080 215 / 3e-63 Protein kinase superfamily protein (.1) AT3G28690 210 / 1e-62 Protein kinase superfamily protein (.1.2.3) AT2G28940 210 / 1e-61 Protein kinase superfamily protein (.1.2) AT2G39110 207 / 9e-61 Protein kinase superfamily protein (.1) AT3G01300 208 / 2e-60 Protein kinase superfamily protein (.1) AT1G69790 205 / 2e-60 Protein kinase superfamily protein (.1) AT1G74490 204 / 3e-60 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022742 [exp] 986 / 0 AT3G08760 578 / 0.0 Protein kinase superfamily protein (.1) Lus10040804 [exp] 210 / 1e-61 AT2G28940 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10038087 [exp] 209 / 1e-61 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10023794 [exp] 207 / 1e-61 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030668 [exp] 209 / 5e-61 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 209 / 9e-61 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10006643 [exp] 206 / 2e-60 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10024391 [exp] 203 / 1e-59 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 202 / 2e-59 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136400 [exp] 716 / 0 AT3G08760 618 / 0.0 Protein kinase superfamily protein (.1) Potri.006G108200 [exp] 689 / 0 AT3G08760 573 / 0.0 Protein kinase superfamily protein (.1) Potri.006G126000 [exp] 222 / 4e-66 AT3G09830 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G129000 [exp] 217 / 4e-64 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 215 / 2e-63 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.001G240500 [exp] 214 / 2e-63 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G031500 [exp] 214 / 3e-63 AT2G28940 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G033800 [exp] 213 / 2e-62 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 212 / 3e-62 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 211 / 9e-62 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10014168 pacid=23152858 polypeptide=Lus10014168 locus=Lus10014168.g ID=Lus10014168.BGIv1.0 annot-version=v1.0 ATGGGCTGCTTCACAGTTTTGAGGAGCAAGAAGAAAAGAGCTGAATATTCAGCTTCCACAAAACCTGTTATTTCCAAAGACCAAATCATACCAGTTACAC TTCCTGAGCCCAAGTTACTGACTCGTTCTTTGCAGTCTGCACCTTCTAGCTTCAAGACTAGAGTCAAGCCTGTTCAATCCGAGAACAACAGAACGGCCAA CAGTAGAGCTCGAGCTTTGTCTGCTCCGGAAAGTCTCGATGCGGAGGATGCACTTGTATCGGCGGAGTATGATGATCACGATGAATCAAAGGGACAAGGA AGTGGGTTCGCAAAGGAACATCATCGGTCCCCAAGTCCGCAACCTCTTCCTCTACCTTCGGTGCATTACTCTGGTTCGCTAAAGCCCTTGAATAGCTTTA AATCGGTAAATGGAAGTGGCCCCCTCTGTGCTTCCGGACCATTGCCACTGCCTCCTACTGGAACACACAGTGGAGGGTTGCGTAGCTTTTCTTACGATGA AGTTGCATCTGCTTGCTGCAATTTTTCCTCCGATCAGTGTGTATCAGAAGGCCTTTCTTCGATCATATATAGGGCTTCTTTTGTTAACGATGCTTCAAGT TCGAGACTTTTCGAAGCCACTGTTACTCGTCTTCAGTCCTCTGCACAGGGTCTAAAGGAATTTATAAGCGAGGTGAACACACTTGCATCTTTGAGGCATC CAAACCTGTGTAAATTGCTCGGTTACCATGCACGCGAAGGATCAGAACAGAGAATGCTGGTCTACGAGAGGCTACATCATGGAAGCTTGGACCGAATCTT GTATGGAAGATCGGATGGTCCACCTCTTGATTGGAATGCTCGGATGAAAATCGCACTCTCAGCTGCACAGGGTCTCACTTTCCTCCATGAAGAAGGTCCA TTCCAGGCAATGTACAACGAATTCTCCGCTGCCAACATACAGATTGATAAAGATTTCAGCGCGAAGCTCTCTGGATATGGTTGTGTTTGTCAGCTACCCG ATAACGAGATCCCAAGTAGTTCCATTGCAGTGGGGAATCTTTCAGTAGAAACACTGGAGAAAGGTCTGCTAACGCCAAAGAGCAATGTGTGGAGCTTCGG TATCGTCCTTCTCGAACTACTCACAGGGCGCAAAAATCTTGACAGCAGGCACACCAGGGAAGAAAGGAACTTGGTTAAGTGGAGCCGTCCTTTCCTCTCT GACGACTGCAGGCTGTCCATGATTATGGATCCACAGCTCAAGCAACGATTTCCCGTGAAAGCAGCAAGAACAGTAGCCGGCATTGCTCTAAGATGCCTTC AGAAAGAACCACTGGATAGACCAACCATGAGAATCGTCGTCGAACACCTCAAGGCAATCCAGGACTTGAAACACTCCTCTCGTTTCCCTCTTCAAGAGCC AGCTTCCGTTGCGAGAAAGCCGATGGCTCGATTTGCCAGTTTTAACGGGATCATCGCCCTTGCACCGCGGTCTAGTTTCTCGCCATCGCCGCCTCCGGGA GCAGGTCCTCTACTTGGTTACTCTCCGCCTAGGGTTTCAGTGTTTTCCGGATCCCTTCCACCTCGTGCATGCTCAAGTTCTACAATCTCGTTGGACGAAC TGGAACGACAGGAGAGCAGGAGATTGTCGAGTTCGACTGTTCGGAGAACTAGCGTAGAGGGATTCTGA
AA sequence Show only first row Show all	>Lus10014168 pacid=23152858 polypeptide=Lus10014168 locus=Lus10014168.g ID=Lus10014168.BGIv1.0 annot-version=v1.0 MGCFTVLRSKKKRAEYSASTKPVISKDQIIPVTLPEPKLLTRSLQSAPSSFKTRVKPVQSENNRTANSRARALSAPESLDAEDALVSAEYDDHDESKGQG SGFAKEHHRSPSPQPLPLPSVHYSGSLKPLNSFKSVNGSGPLCASGPLPLPPTGTHSGGLRSFSYDEVASACCNFSSDQCVSEGLSSIIYRASFVNDASS SRLFEATVTRLQSSAQGLKEFISEVNTLASLRHPNLCKLLGYHAREGSEQRMLVYERLHHGSLDRILYGRSDGPPLDWNARMKIALSAAQGLTFLHEEGP FQAMYNEFSAANIQIDKDFSAKLSGYGCVCQLPDNEIPSSSIAVGNLSVETLEKGLLTPKSNVWSFGIVLLELLTGRKNLDSRHTREERNLVKWSRPFLS DDCRLSMIMDPQLKQRFPVKAARTVAGIALRCLQKEPLDRPTMRIVVEHLKAIQDLKHSSRFPLQEPASVARKPMARFASFNGIIALAPRSSFSPSPPPG AGPLLGYSPPRVSVFSGSLPPRACSSSTISLDELERQESRRLSSSTVRRTSVEGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08760		ATSIK	Protein kinase superfamily pro...		Lus10014168 [exp]	0	1
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10012215 [exp]	1.7	0.9570
					Lus10039442 [exp]	2.4	0.9208
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10001265 [exp]	2.4	0.9538
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10024643 [exp]	3.5	0.9473
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10002309 [exp]	4.5	0.9312
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10026082 [exp]	5.5	0.9230
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10032277 [exp]	9.0	0.8987
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031472 [exp]	9.4	0.8931
AT1G56240		ATPP2-B13	phloem protein 2-B13 (.1)		Lus10031471 [exp]	10.2	0.9027
AT4G36500			unknown protein		Lus10014291 [exp]	11.8	0.8946

Compare expression of checked genes

Lus10014168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.