Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32010 232 / 5e-66 B3 HSL1, HSI2-L1, VAL2 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) AT2G30470 179 / 2e-47 B3 HSI2, VAL1 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) AT4G21550 110 / 5e-25 B3 HSI2-L2, VAL3 VP1/ABI3-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022741 [exp] 565 / 0 AT4G32010 748 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025226 [exp] 378 / 3e-119 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025142 [exp] 371 / 2e-116 AT4G32010 794 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10011245 [exp] 107 / 1e-23 AT2G30470 399 / 1e-122 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Lus10018440 [exp] 104 / 8e-23 AT4G32010 487 / 1e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G108300 [exp] 325 / 4e-99 AT4G32010 743 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.016G136500 [exp] 322 / 2e-98 AT4G32010 789 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.013G157500 [exp] 230 / 6e-65 AT2G30470 767 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.019G130300 [exp] 224 / 5e-63 AT2G30470 757 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.004G035300 [exp] 176 / 4e-46 AT4G32010 483 / 3e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.011G043600 [exp] 172 / 7e-45 AT4G32010 479 / 5e-157 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014169 pacid=23152878 polypeptide=Lus10014169 locus=Lus10014169.g ID=Lus10014169.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCCAAGCATTGCATGAATGCATTATGCGGCACATCCACGTCGAGCGTTTGGATAAAAGGCTGGGGTCTGCGATCTGGACAATTCGCCAATC TCTGCGATAAGTGCGGGTTGGCATTCGAGCAATCAATCTTTTGTGAAGTATTTCACCCTAAAGATCCTGGATGGAGGGAATGCACGTCATGTGGCAAGCG TCTCCATTGTGGCTGCGTTGCTTCCATACTTCTGGTTGAGCTCTTGGATGATGGTGGCGTAAATTGCTTGAATTGCTATAGAAAATCTGGAGCAAATACT GTCGGGGCTGATAAGAAACCTAATGGGTTTGTCAAATCAAGAATTAATGGCATCGCTGAAATGCAATCTCTCTCAGCTGAGAATGGAAGAATGGGTGCAA GAAGTTTGCTTCAATTGCATGGTGATGACATCAATGCATCTTTTAGACAGATGAAGCAGCAACTTGTTTTTCCCAAAATGGGTGAAACCGGAAGCACAAG TTTCTCACATTTTGACCAAGCATCAAGCATATTTTCTCTACCTCTCAAAGATATTGGAGCTAATGATCTATATGAATCTTTAGGACATACAAATTTGAGT ATGAGGATTGGTCCTTTAGGGAACTCGTCTCCTTTTGGAACTGTCGTTGATGAAAGGTCCCAGAGTAAAACGCCGCTGGTTCCTGGGTCAAGTTCTCGCC ATCTATTATTCAAGCCTCCAAATATTGCTACAGGTATGGAGCCAAGTAATATCGTACGCATTGCTAGGCCGCCTGCTGAAGGACGGGGAAGATCTCAGTT GCTACCTCGGTATTGGCCTAGGATTACGGACCAAGAACTTCAGCAGATCTCCATGGATCGCATAGACCCAGAGAGAAAGCTGATAATGGGATTTAGGAAA GCACCAAACCCTGCCACAACGCAGGGAAGCAGTGATGCGCACTTAAGTGCAATGTCGAAACATTTTCAGTCGGCTAGTGGTGATACTACTAGTTGGTTTA AAGCTGAGAAGCAGGAGGGCATATCTCGGGAAGGTTCAATGCAGTCATCGACTCTGGTTCCCGAGAAGAAAAGAGCAAGGAACATTGGAACCAAAAGTAA GAGGCTATCAATGGCCGACCAAGATGCTTCGGAGTTGAAACTTACCTGGGAAGAAGCACAAGATTTGCTCCGCCCTGCACCAACTTCCAAACCAAACATC GTCACCATCGACGATCATGAGTTTGAAGAATATGATGAACCTCCTGTATTCGGGAAGACAAGTATTTTCGTTGCGCACTCTACTGGGAGCAATGGGCAGA GTGCGATAACTGTTCAAAGTGGCGGAAGTTGCCAGTTGATTTTCTTCTTCCACCAAAGTGGACATGCAGTGAAAATACTTGGGATCAGAGCAGATCACAA CAAACGGAGACTGACAAGCAAGCAAGGAGCGGCTCAGGAACCCGAATCCTCTGGACTCGAAGCTTTGGCGAATGTTGCGATCCACGGAGACGCCGGCCCC ACCACAACCAAGCATCCCCGGCACCGTGCCGGCTGCTCTTGCATTGTGTGCATCCAGCCCCCGAGCGGGAAAGGCAAGCATAAGCAGAATTGCACCTGTA ATGTCTGCAAAACAGTGAAACGGCGATTCGAAACTCTACTGAAGCGCAAGAAGAAGCGCCTCTCCGATCGCGAAGCAGAGCTCGCCGCCCAGATGAATCA ACAGCAGCAGCAGGAAGGTGAAACTAGCTCGAGAAGTAACCGGAGCAGATCGACGGAGAAACCGCTGGTTGAGAACGGGAAGGGACACATCGACCTGAAT TTCTATCCGGACCGTGAAGAAAACTCCTCCCAAGTTTTAGTTAAGAACCAAATTATGACAATGCTGGACCTTCTTCAAGCAGCCACCAACCACCTTCCGT TGGAGAATTATCGTAACTGTCCGACAAACTTGGCATCAGAGCAAGAGACAGGCTCAACATCTCGTGTCCCTTCACAAGAGACTGATGGTGAAGACAATCC ATAA
AA sequence Show only first row Show all	>Lus10014169 pacid=23152878 polypeptide=Lus10014169 locus=Lus10014169.g ID=Lus10014169.BGIv1.0 annot-version=v1.0 MASSKHCMNALCGTSTSSVWIKGWGLRSGQFANLCDKCGLAFEQSIFCEVFHPKDPGWRECTSCGKRLHCGCVASILLVELLDDGGVNCLNCYRKSGANT VGADKKPNGFVKSRINGIAEMQSLSAENGRMGARSLLQLHGDDINASFRQMKQQLVFPKMGETGSTSFSHFDQASSIFSLPLKDIGANDLYESLGHTNLS MRIGPLGNSSPFGTVVDERSQSKTPLVPGSSSRHLLFKPPNIATGMEPSNIVRIARPPAEGRGRSQLLPRYWPRITDQELQQISMDRIDPERKLIMGFRK APNPATTQGSSDAHLSAMSKHFQSASGDTTSWFKAEKQEGISREGSMQSSTLVPEKKRARNIGTKSKRLSMADQDASELKLTWEEAQDLLRPAPTSKPNI VTIDDHEFEEYDEPPVFGKTSIFVAHSTGSNGQSAITVQSGGSCQLIFFFHQSGHAVKILGIRADHNKRRLTSKQGAAQEPESSGLEALANVAIHGDAGP TTTKHPRHRAGCSCIVCIQPPSGKGKHKQNCTCNVCKTVKRRFETLLKRKKKRLSDREAELAAQMNQQQQQEGETSSRSNRSRSTEKPLVENGKGHIDLN FYPDREENSSQVLVKNQIMTMLDLLQAATNHLPLENYRNCPTNLASEQETGSTSRVPSQETDGEDNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21550	B3	HSI2-L2, VAL3	VP1/ABI3-like 3 (.1)		Lus10014169 [exp]	0	1
AT5G14610			DEAD box RNA helicase family p...		Lus10010718 [exp]	7.3	0.7911
AT4G15610			Uncharacterised protein family...		Lus10033972 [exp]	10.0	0.7802
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035590 [exp]	10.1	0.7748
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035648 [exp]	12.5	0.7697
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035647 [exp]	14.0	0.7670
AT2G30480			unknown protein		Lus10019109 [exp]	16.1	0.7031
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10015547 [exp]	16.8	0.7596
AT5G38760			Late embryogenesis abundant pr...		Lus10012179 [exp]	17.2	0.7440
AT1G71820		SEC6	SEC6 (.1.2)		Lus10036425 [exp]	23.7	0.6445
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011403 [exp]	24.0	0.7573

Compare expression of checked genes

Lus10014169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.