Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64320 151 / 2e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09680 148 / 1e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 145 / 2e-37 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62680 140 / 2e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G11690 140 / 3e-36 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G05670 140 / 8e-36 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT3G53700 139 / 3e-35 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63070 138 / 3e-35 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G09900 137 / 4e-35 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G64583 136 / 6e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022739 [exp] 469 / 3e-164 AT5G39710 144 / 2e-37 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006083 [exp] 142 / 2e-36 AT4G19890 844 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027916 [exp] 141 / 5e-36 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026558 [exp] 141 / 8e-36 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 140 / 9e-36 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 139 / 3e-35 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 137 / 3e-34 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019081 [exp] 131 / 1e-33 AT5G61400 406 / 7e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 133 / 4e-33 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136700 [exp] 350 / 1e-115 AT1G62680 175 / 4e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 159 / 2e-42 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034300 [exp] 150 / 3e-40 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 145 / 8e-38 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 146 / 1e-37 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 144 / 3e-37 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 142 / 9e-37 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 140 / 5e-36 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 140 / 5e-36 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G035700 [exp] 140 / 7e-36 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014170 pacid=23152936 polypeptide=Lus10014170 locus=Lus10014170.g ID=Lus10014170.BGIv1.0 annot-version=v1.0 ATGATGATGCCTCCGCCGCCATCAACGCTTCTCCATTCTTCTCATCCAACTCTTCCTCTCTGTAACAACTACAACCGCCGCCATATTAGTCCCAAATTCC CAACAACCGGAGCCGCCTTCAATTCCCTCCCAACAACCAAAACTTCTTCTTCTTCTTCAACCAGACGCCACAACTCCACAACCTTATCCTCCCAAACCAA AACTAAGAACGTAACCACACGATTACTCGGCCGAACGTTAACCACCCTACTCAAAGATTCAAACTCCGACTCATCAGAATCGATTATTCTAAACCAAATG GTAGAGAACAGCCGCACTTGTTCTTCTCCACCGGACGTCACACTGTTTACCGCATTAGTCGAATGTTTCTGCAAAAGGGGGAAACTCCAGAAAGCGTATC AAGTGGTCGAATTAATGGCGAAATTCGGGTTAAACCCCTCTATTCAGACGTACAATTGCTTGATCAAAGGATTGTGTTACGTTGGGAGAGTTGAACAAGC TTTTCAATTGCTTGGAGATATAAAGAAGATGAAAGATGACACAGTACTACCGGATATTTATACTTACTCTGTGATGATGGACGGATTCTGCAAAGTCGGC CGATCTGACGAGGCAATGGAGCTGCTTGACGAAGCTATGGAGAAAGGATTGAAGCCGAATGCGGTCAGTTTCAATGCTCTGTTCCATGGCTATAATGTGG AGGGAAGGCCATTGGAAGGGATGAAACTGTTGCAGCGGATTAAAAAGAAGGGTTTTGAACCTGATTATGTATGTTACAGTACTCTATTGCGAGGATTATT GTTATGGAAGAAGATTCGCGGTGCTGCTTTGGTGTATGAAGAAATGGTGGATGATGGATATGAAGCGGATGAAGCGTTGATGAACAATCTCCTGAGAGGT TTGTGTAACAAGCGGCAGGTTGGTGTTGAGAATGGGTTGCTGGGAGTGGCACACCAGGTGTTTGATGAAATGACTGAGAGAGGTTTCGGGATGGATCGAA GGGCGTGTGATATGTTTATCGGGCAGCTTTGTCGAGTCGGGAAGGGCGAGGATGCGGTGGCGAAGTTGGAACGGATGGTTGAGCTTGGGTACACGGTGAG AGAAGAGACGGTGGAGGTTGTGCTTCGAGCGCTTTGCCTTGAGGGAGAAGCAACCGAGGCAGGTAGGGTTTTGGTTCTCATGTTTGAGAACCGTGTAATC CCGTCGAGGTTGTCATACGAGGTTTTGATCAAGGAATTGAATCGACAACAACGACATTTGGAGGGCAGTTGCGTCTATGGCGCGTCAGTTGTTCGAGGTG TGGCTCCGAGATATACGAGCGAGATTGTGCAAAGTTCTAACCCAGTAACATCAACAATGAATTAA
AA sequence Show only first row Show all	>Lus10014170 pacid=23152936 polypeptide=Lus10014170 locus=Lus10014170.g ID=Lus10014170.BGIv1.0 annot-version=v1.0 MMMPPPPSTLLHSSHPTLPLCNNYNRRHISPKFPTTGAAFNSLPTTKTSSSSSTRRHNSTTLSSQTKTKNVTTRLLGRTLTTLLKDSNSDSSESIILNQM VENSRTCSSPPDVTLFTALVECFCKRGKLQKAYQVVELMAKFGLNPSIQTYNCLIKGLCYVGRVEQAFQLLGDIKKMKDDTVLPDIYTYSVMMDGFCKVG RSDEAMELLDEAMEKGLKPNAVSFNALFHGYNVEGRPLEGMKLLQRIKKKGFEPDYVCYSTLLRGLLLWKKIRGAALVYEEMVDDGYEADEALMNNLLRG LCNKRQVGVENGLLGVAHQVFDEMTERGFGMDRRACDMFIGQLCRVGKGEDAVAKLERMVELGYTVREETVEVVLRALCLEGEATEAGRVLVLMFENRVI PSRLSYEVLIKELNRQQRHLEGSCVYGASVVRGVAPRYTSEIVQSSNPVTSTMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09680			Pentatricopeptide repeat (PPR)...		Lus10014170 [exp]	0	1
AT3G61550			RING/U-box superfamily protein...		Lus10036404 [exp]	3.5	0.8397
AT5G42450			Pentatricopeptide repeat (PPR)...		Lus10034408 [exp]	3.6	0.7937
AT1G55890			Tetratricopeptide repeat (TPR)...		Lus10020073 [exp]	5.1	0.8430
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10031423 [exp]	6.3	0.8253
AT3G25580			Thioredoxin superfamily protei...		Lus10026602 [exp]	6.6	0.8014
AT2G41475			Embryo-specific protein 3, (AT...		Lus10043273 [exp]	10.2	0.7747
AT1G58330		ZW2	transcription factor-related (...		Lus10005041 [exp]	11.1	0.8355
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10013607 [exp]	13.7	0.7842
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Lus10021410 [exp]	13.9	0.8093
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10032905 [exp]	14.1	0.8042

Compare expression of checked genes

Lus10014170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.