Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01890 941 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G56370 921 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G28040 639 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G12460 406 / 3e-127 Leucine-rich repeat protein kinase family protein (.1) AT1G62950 402 / 2e-125 leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G36180 385 / 8e-117 Leucine-rich receptor-like protein kinase family protein (.1) AT3G51740 326 / 1e-97 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT1G55610 316 / 1e-91 BRL1 BRI1 like (.1.2) AT3G47570 281 / 2e-80 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 268 / 5e-75 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022738 [exp] 1621 / 0 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025223 [exp] 1019 / 0 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025139 [exp] 1014 / 0 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012877 [exp] 924 / 0 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030526 [exp] 916 / 0 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037276 [exp] 530 / 4e-173 AT3G28040 1013 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10035687 [exp] 530 / 4e-173 AT3G28040 1021 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10006675 [exp] 391 / 3e-121 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004266 [exp] 350 / 8e-105 AT4G36180 1061 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G137000 [exp] 1132 / 0 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G108600 [exp] 1087 / 0 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G091000 [exp] 998 / 0 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 976 / 0 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G147300 [exp] 683 / 0 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G233600 [exp] 652 / 0 AT3G28040 1116 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G117500 [exp] 429 / 8e-136 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G114500 [exp] 427 / 1e-134 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G235100 [exp] 357 / 1e-106 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G139700 [exp] 335 / 6e-99 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014174 pacid=23152866 polypeptide=Lus10014174 locus=Lus10014174.g ID=Lus10014174.BGIv1.0 annot-version=v1.0 ATGTCCCATTCCAACATGCTCTTCACCCTTTTCTTCTTACTGCTACTGCGACACTCTGTTGTAACCCACTCTGCCTACCAAATCTTAAACGACGACGTTT TGGGGCTCATCGTCTTCAAAGCGGCCCTTGTGGACCCGGACTCTGTACTCGCCTCCTGGAACGAAGAAGACGATACTCCTTGCTTTTGGTTCGGAGTGAA ATGCGACCCGTTTACCCGTCGGGTCACCGACGTCTCCCTCGATAACTGCTCCTTGTCCGGCCACGTCGGGAGGGGACTCCTCCGGCTGCAGTCTTTGCGA AAGCTCTCGCTTTCGGGGAACAATTTGACAGGTTTGATTAACCCGGATTTGACCCGGATGCTACCGGAGTTGAGACTGGTTGACTTCAGTAGCAACGGAT TCTCCGGGGCGATTCCGAAGGAGCTTTTCGAGCAATGCGGGTCTTTAACGTACGTTTCTTTAGCCGGAAATGGTCTTGAAGGTGAGATTCCGGATTCGTT GACTTCGTGCTTCGGTTTGACTCATTTGAATTTCTCGTCGAATCGGATCTCCGGCAGGTTTCCGGCCGGAGTTTGGAACTTGAGGAGCTTGCAGGTACTC GATTTTTCCGGTAATTTGTTGGATGGTGAGATTCCGAAAGGGGTTTCCAACTTGTATGATCTGAGACAGATTGCTTTGAATAACAATAAGTTTTCCGGCG AACTGCCGGTGGAAATCGGCAGCTGCTCGTTTCTTGAGAAGGTGGATTTCGCCGGAAATTTTTTCTCCGGCGGTTTTCCTGAATCAATTCAGAAGCTTAA TTCTTGCAATGAGCTGAGATTAGGAGGAAATCAGTTGACTGGGTTCGTCCCCGGATGGATTGGTGAATTGAAAAGCATAGAAAGTTTGGATCTTTCAACG AACCGGTTTTCGGGTCGGATTCCTGGGTCAATTGGGGATATGAACAATCTGAAGGAGCTGAATCTGTCGATGAACCAGCTCAATGGCGGATTACCCGATT CGATTTCGAATTGCATAAATCTTCTGAGCTTGGATTTGAGAGGTAACCAGCTTAATGGTGATGTTCCTTCTTGGTTGTTTAAAGATGGTTTGGTTCTTGA AAAGCTGGATGTTTCTTCAAATGGGTTGTCTGGTGAGATCCCATATGATTTTAGTATTAGCAGCAGCATTCTGGTTCTGAATCTGTCCAGAAATCAGCTG TTCGGTTCGATCCCATCAACCATCGGTCAGCTGAAATCGGTTCAAGTTGTTGATTTCAGTGGCAACAAACTCACTGGGGAAATCCCTTCTGAGATTTGTG ATGCTGCATTGCTTGATCTCAGATTAGACCACAACTTCCTCACCGGGAATCTTCCGGCTCGAATCGATTACTGCTCTTCACTCACATCACTGATGTTAGC TAAGAACAACTTGACAGGTGAAATCCCAGCATCCATTACAAACCTAACCAACCTGCAATTTGTGGACTTATCATTCAACATCTTCTCCGGAAGCCTACCG AAAGAGCTCGCGAATCTCTCTCGGTTGGCTTCCTTCAATGTCTCTCACAACAAATTGGAAGGTGAGTTACCAGTTGGGGGATTCTTCAACATCATTTCGC CATCTTCGATCTCTGGCAACCCGTCTCTCTGTGGAGCTGCTGTTAACCGTTCTTGTCCTTCCGTGCATCCCAAGCCAATTGTCCTGAACCCCAACTCTTC GAGTCGAAATGGTCCCAGTTCGTCGAGTAATAGTAGCCATCGGAAGATCGCGCTAAGTATATCGGTTCTCGTGGCGATCGGTGCTGCTGTTTGTATAATC GTCGGCGTTATAGCCGTCACATTGCTCAACATCCATGTCAGATCTTCCATGGCAAGGATGAATGTAGAAGTTACTGCATTGTCAGGCGAGGGGGATGACG GTAATTTCAGCTGTTCGCCTGATCCGAATTACGGGAAGCTCGTGATGTTCTCCGGCGACGCTGAGTTCGTTGCCGGCGGTCAGGCATTGCTCAACAAGGA CTGTGAAATTGGCCGTGGAGGGTTTGGCGTGGTTTACAAGACGTCGCTTCGCGATGGGAGATCGGTCGCTATCAAGAAGCTGACGGCGTCGAGCTTGATC AAGTCCCAAGTCGAATTCGAGACCGAAGTGATGAAGCTCGGGAAGGCCGGCGCGCATTACAATGTGGTTGCATTGGAAGGGTATTACTGGACTCCGTCTT TGCAGTTGTTGATCTACGAGTACGTATCCGATCGTAGCTTGTACAAACGCCTCCATGAAAGATCGTCGGCGCGATGCCTGACGTGGCGCGAGAGGTTCAA CATTGTGTCCGGGATGGCGAAAGGGTTAGCGCATCTACATAAGATGAACATAGTCCACTACAATCTCAAATCGACCAACGTGTTGGTGGACGAAGACTCA GGGGAGGCGAAAGTGGGGGACTACGGTCTAGCGAGGCTACTCCCCACGCTAGACCGGTGCGTCCTCAGCAGCAAGATGCAGAGCGCGTTGGGGTACATGG CGCCGGAATTTGCGTGCAAGACGGTCAAGATAACTGAGAAATGTGATGTGTACGGGTTTGGAGTGTTGGTTCTCGAAGTGGTGACAGCAAGAAGACCCGT GGAGTACACGGAGGACGACGTTGTGGTCCTGAGCGACACGGTCCGAGGAGCTTTGGAAGAGGGGAAGGTTGAGGAGATTGTGGATCGGAACCTGAGAGGG AATTTTCCGGCAGATGAAGCGATACCGTTGGTGAAACTCGGGTTAATCTGCGCGTCGCAGGTGCCATCAAATCGGCCCGATATGGAAGAAGTGTTGAACA TTTTGGATATGATTCAGTGTCCTCCAGAAGGGCAAGAAGTAGTCCTTGAATGA
AA sequence Show only first row Show all	>Lus10014174 pacid=23152866 polypeptide=Lus10014174 locus=Lus10014174.g ID=Lus10014174.BGIv1.0 annot-version=v1.0 MSHSNMLFTLFFLLLLRHSVVTHSAYQILNDDVLGLIVFKAALVDPDSVLASWNEEDDTPCFWFGVKCDPFTRRVTDVSLDNCSLSGHVGRGLLRLQSLR KLSLSGNNLTGLINPDLTRMLPELRLVDFSSNGFSGAIPKELFEQCGSLTYVSLAGNGLEGEIPDSLTSCFGLTHLNFSSNRISGRFPAGVWNLRSLQVL DFSGNLLDGEIPKGVSNLYDLRQIALNNNKFSGELPVEIGSCSFLEKVDFAGNFFSGGFPESIQKLNSCNELRLGGNQLTGFVPGWIGELKSIESLDLST NRFSGRIPGSIGDMNNLKELNLSMNQLNGGLPDSISNCINLLSLDLRGNQLNGDVPSWLFKDGLVLEKLDVSSNGLSGEIPYDFSISSSILVLNLSRNQL FGSIPSTIGQLKSVQVVDFSGNKLTGEIPSEICDAALLDLRLDHNFLTGNLPARIDYCSSLTSLMLAKNNLTGEIPASITNLTNLQFVDLSFNIFSGSLP KELANLSRLASFNVSHNKLEGELPVGGFFNIISPSSISGNPSLCGAAVNRSCPSVHPKPIVLNPNSSSRNGPSSSSNSSHRKIALSISVLVAIGAAVCII VGVIAVTLLNIHVRSSMARMNVEVTALSGEGDDGNFSCSPDPNYGKLVMFSGDAEFVAGGQALLNKDCEIGRGGFGVVYKTSLRDGRSVAIKKLTASSLI KSQVEFETEVMKLGKAGAHYNVVALEGYYWTPSLQLLIYEYVSDRSLYKRLHERSSARCLTWRERFNIVSGMAKGLAHLHKMNIVHYNLKSTNVLVDEDS GEAKVGDYGLARLLPTLDRCVLSSKMQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTARRPVEYTEDDVVVLSDTVRGALEEGKVEEIVDRNLRG NFPADEAIPLVKLGLICASQVPSNRPDMEEVLNILDMIQCPPEGQEVVLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01890			Leucine-rich receptor-like pro...		Lus10014174 [exp]	0	1
AT5G01890			Leucine-rich receptor-like pro...		Lus10022738 [exp]	1.0	0.9616
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10036586 [exp]	1.4	0.9402
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Lus10036546 [exp]	2.4	0.9245
AT3G14470			NB-ARC domain-containing disea...		Lus10003571 [exp]	6.0	0.9172
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10006612 [exp]	6.5	0.9154
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10005979 [exp]	8.7	0.9335
AT1G62020			Coatomer, alpha subunit (.1)		Lus10040752 [exp]	9.2	0.9238
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Lus10028752 [exp]	9.5	0.9114
AT1G66830			Leucine-rich repeat protein ki...		Lus10017611 [exp]	9.5	0.8984
AT2G32240			unknown protein		Lus10010464 [exp]	9.6	0.9049

Compare expression of checked genes

Lus10014174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.