Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38560 349 / 4e-119 RDO2, TFIIS REDUCED DORMANCY 2, transcript elongation factor IIS (.1) AT4G18720 111 / 3e-28 Transcription factor IIS protein (.1) AT2G42730 112 / 5e-27 F-box family protein (.1.2) AT5G42325 80 / 3e-17 Transcription factor IIS protein (.1) AT5G25520 64 / 6e-11 SPOC domain / Transcription elongation factor S-II protein (.1.2) AT2G25640 62 / 2e-10 SPOC domain / Transcription elongation factor S-II protein (.1) AT5G11430 59 / 3e-09 SPOC domain / Transcription elongation factor S-II protein (.1) AT2G33300 48 / 6e-06 Transcription elongation factor (TFIIS) family protein (.1) AT2G13640 47 / 1e-05 Transcription factor IIS family protein (.1) AT5G05140 45 / 4e-05 Transcription elongation factor (TFIIS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022735 [exp] 595 / 0 AT2G38560 375 / 2e-129 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10025215 [exp] 394 / 5e-137 AT2G38560 384 / 8e-133 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10025131 [exp] 387 / 4e-134 AT2G38560 387 / 6e-134 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10034247 [exp] 275 / 6e-91 AT2G38560 295 / 1e-98 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10029016 [exp] 119 / 5e-32 AT2G38560 131 / 1e-36 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10029017 [exp] 71 / 1e-14 AT2G38560 70 / 1e-14 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10008108 [exp] 60 / 1e-09 AT5G11430 559 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1) Lus10013146 [exp] 59 / 5e-09 AT5G11430 550 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1) Lus10039000 [exp] 44 / 0.0001 AT5G05140 382 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109300 [exp] 378 / 1e-130 AT2G38560 393 / 2e-136 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Potri.016G138100 [exp] 377 / 1e-130 AT2G38560 402 / 3e-140 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Potri.006G246800 [exp] 65 / 3e-11 AT5G25520 536 / 1e-173 SPOC domain / Transcription elongation factor S-II protein (.1.2) Potri.018G034500 [exp] 64 / 1e-10 AT5G25520 513 / 1e-164 SPOC domain / Transcription elongation factor S-II protein (.1.2) Potri.001G307600 [exp] 42 / 0.0003 AT5G09850 336 / 4e-114 Transcription elongation factor (TFIIS) family protein (.1) Potri.019G003900 [exp] 42 / 0.0005 AT5G09850 322 / 7e-109 Transcription elongation factor (TFIIS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07500 [flax] [poplar] TFIIS_M Transcription factor S-II (TFIIS), central domain CL0167 [flax] [poplar] Zn_Beta_Ribbon PF01096 [flax] [poplar] TFIIS_C Transcription factor S-II (TFIIS) CL0167 [flax] [poplar] PF08711 [flax] [poplar] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Lus10014178 pacid=23152954 polypeptide=Lus10014178 locus=Lus10014178.g ID=Lus10014178.BGIv1.0 annot-version=v1.0 ATGCCTCCTCCTCTCGGTCCCTTGGAGATAGAGCTGATCGAGCTGTTCGAGTCAGCTAAGAAAGCCGGCGATGACGCCTTCGGGGACGATATTGCCTCCG ACGGTCCAGAGGTGGAGCGATGTGTTGATGCACTCAAACTGCTCGAGAAATTCCCAGTTACTTTCGACATTCTCGCTTCCACTCAGGTTGGGAAACGACT ACGGACTCTAACCAAGCATCCAATTGCAAAGATCCAAAACATAGCTTCTGATTTGCTTGATCGTTGGAAACAGTTAGTCCTTGATGAGTCCAGTAAAAGG AAAGCTCAAGTGAGTTCACCTGAAAATGGTGCGAAACCACTCAAACCATCCAGTGCTACGAAAGCAGGAAAACCATCCACAGCTGCTAAAGCAGACAAAC CATCCAATGCTGGAGTTGTCAAAATTGAGATTAAGGATCGGACGTCAAATGGGAAGATGGAGAAGACAGCAAAGGAGGAGAAAGAACCTTCCCCTTCAAA GAAACCACCACAGGGAGCAGCTACTCCTCGCCCAAGGCATAGTTCGCTGCTGGCGAAATGCAATGATCCCTTGAGGGACAAAGTTCGGGAGCTTCTCGCA GAGGCCCTTGAAAAGGTTTTCAGAGAGGCAGACGATCATCACAAGGACGAAGTGAACTCCTGTGACCCTCTCCATGTTGCTGTATCGGTGGAATCTGCAA TGTACGCAAAGTTGGGGAAGTCGAATGGCGCGGAGAAGTTCAAGTACAGATCAATAATGTTCAACATCAAGGATCCGAAGAACCCGGATCTTAGGAGGAG AGTGCTGCTGGGGCAAGTCAAACCCGAGAGGCTCCTTACAATGACCCCGGAAGAAATGGCGAGCGACGAAAGACAGCAAGAGATTCAGCAAATAAAAGAG AAAGCACTGTTCGACGCTGAGCGTGGTGGTCCAGCCAAGGCCACGACCGATCAGTTCAAATGCGGACGTTGTGGTCAGAGGAAATGTACGTACTACCAGA TGCAGACAAGGAGTGCCGATGAGCCCATGACCACTTATGTAACTTGTGTAAACTGTGACAACCACTGGAAGTTCTGTTAG
AA sequence Show only first row Show all	>Lus10014178 pacid=23152954 polypeptide=Lus10014178 locus=Lus10014178.g ID=Lus10014178.BGIv1.0 annot-version=v1.0 MPPPLGPLEIELIELFESAKKAGDDAFGDDIASDGPEVERCVDALKLLEKFPVTFDILASTQVGKRLRTLTKHPIAKIQNIASDLLDRWKQLVLDESSKR KAQVSSPENGAKPLKPSSATKAGKPSTAAKADKPSNAGVVKIEIKDRTSNGKMEKTAKEEKEPSPSKKPPQGAATPRPRHSSLLAKCNDPLRDKVRELLA EALEKVFREADDHHKDEVNSCDPLHVAVSVESAMYAKLGKSNGAEKFKYRSIMFNIKDPKNPDLRRRVLLGQVKPERLLTMTPEEMASDERQQEIQQIKE KALFDAERGGPAKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCDNHWKFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10014178 [exp]	0	1
AT2G25970			KH domain-containing protein (...		Lus10023854 [exp]	12.1	0.8528
AT3G08910			DNAJ heat shock family protein...		Lus10027803 [exp]	17.4	0.8411
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10002823 [exp]	18.2	0.8474
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10039019 [exp]	25.3	0.7585
AT5G14530			Transducin/WD40 repeat-like su...		Lus10014558 [exp]	25.6	0.8404
AT4G37210			Tetratricopeptide repeat (TPR)...		Lus10019658 [exp]	29.9	0.8393
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026269 [exp]	31.6	0.8080
AT2G03170		ASK14	SKP1-like 14 (.1)		Lus10031171 [exp]	32.8	0.8059
AT3G49470		NACA2	nascent polypeptide-associated...		Lus10015579 [exp]	40.6	0.8355
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10017858 [exp]	42.0	0.7773

Compare expression of checked genes

Lus10014178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.