Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01910 108 / 9e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022734 [exp] 293 / 4e-102 AT5G01910 109 / 5e-30 unknown protein Lus10025130 [exp] 175 / 2e-55 AT5G01910 105 / 1e-28 unknown protein Lus10025214 [exp] 162 / 3e-50 AT5G01910 104 / 2e-28 unknown protein Lus10035364 [exp] 118 / 2e-34 AT5G01910 44 / 1e-06 unknown protein Lus10003904 [exp] 45 / 1e-05 AT4G11080 506 / 2e-177 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10001909 [exp] 45 / 1e-05 AT4G11080 496 / 2e-173 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10032379 [exp] 44 / 5e-05 AT4G11080 481 / 1e-167 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G138300 [exp] 145 / 1e-43 AT5G01910 122 / 2e-35 unknown protein Potri.006G109400 [exp] 138 / 5e-41 AT5G01910 96 / 6e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014179 pacid=23152868 polypeptide=Lus10014179 locus=Lus10014179.g ID=Lus10014179.BGIv1.0 annot-version=v1.0 ATGCCGCCGGTCCAATCTCATCTCGCCGGAGAACGAAAGCCCAAGCCAAAGAATGGCCGGACGCCTCTACAACCCAAGAACTCCAACCCCATTTCCAAAC CATCCCCATACCCCGTTCCGGTCAAGATCGAAACTTTTCGGGCACCACCGGACAAGGACAACGACAAGGAGAACCATCTTCACCGCCCGGTTCGAACAAC TCCGGTTATCAGCATGCTGATCCAGCCGATCATCGATCCGTCGCTGGGGGAGGAGCTGAGTGCGATGCGGAAGAGGATGGAGAGGCTGAGATTGGACAGA GAGAAGATTGAGAAGATGCTCGAGGAGAGAGGAAAGGTGTTGGATTTGCGGATGAAGGAGCTCGAGATTCGAGGAGAAGCTCAGATGATGATGGAGCTCG AAGTGGATCGATTGTTCAGATTGAAGGAGCTCCATTCTTTCTCCATGAGGGTTTCTCCGATTCGGTCGCTGCGAGATAAGGAACACGAGAAAAGAACAAT GAGCCAACGCTACGAGGGAGAAGAAGTTATGCAGCGTGGGAATGAGAGTCCTTGCTGTTCAAGCACAAGCTCCAATTCTGTTTCAACCCCAATGGCTGCA GTTGCTGTTGTTTAG
AA sequence Show only first row Show all	>Lus10014179 pacid=23152868 polypeptide=Lus10014179 locus=Lus10014179.g ID=Lus10014179.BGIv1.0 annot-version=v1.0 MPPVQSHLAGERKPKPKNGRTPLQPKNSNPISKPSPYPVPVKIETFRAPPDKDNDKENHLHRPVRTTPVISMLIQPIIDPSLGEELSAMRKRMERLRLDR EKIEKMLEERGKVLDLRMKELEIRGEAQMMMELEVDRLFRLKELHSFSMRVSPIRSLRDKEHEKRTMSQRYEGEEVMQRGNESPCCSSTSSNSVSTPMAA VAVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01910			unknown protein		Lus10014179 [exp]	0	1
AT5G03870			Glutaredoxin family protein (....		Lus10021353 [exp]	1.0	0.9701
AT5G45700			Haloacid dehalogenase-like hyd...		Lus10007321 [exp]	3.2	0.9637
AT5G03870			Glutaredoxin family protein (....		Lus10017029 [exp]	4.0	0.9575
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Lus10041617 [exp]	5.5	0.9596
AT5G45700			Haloacid dehalogenase-like hyd...		Lus10029273 [exp]	5.5	0.9566
AT1G70340			Plant protein of unknown funct...		Lus10029158 [exp]	8.4	0.9557
AT4G03100			Rho GTPase activating protein ...		Lus10024768 [exp]	8.5	0.9468
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10027331 [exp]	8.5	0.9544
AT5G07670			RNI-like superfamily protein (...		Lus10027218 [exp]	8.8	0.9467
AT2G26180		IQD6	IQ-domain 6 (.1)		Lus10013522 [exp]	10.6	0.9467

Compare expression of checked genes

Lus10014179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.