Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38570 218 / 5e-69 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022733 [exp] 446 / 2e-158 AT2G38570 244 / 3e-79 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109500 [exp] 237 / 4e-76 AT2G38570 263 / 2e-86 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014180 pacid=23152893 polypeptide=Lus10014180 locus=Lus10014180.g ID=Lus10014180.BGIv1.0 annot-version=v1.0 ATGGGTTCAACCCATCTTCTTCTTCAGTGCAACCTTTATCCATTAATCAACCCTCATCCTAAACCCACAAATCCCCGCTTCAGCTCCGTGTGCGCAAGTG GAAGAAGAACCAGCCATGGCGAAATGGGTCCCCAGTACGACGAATTAGGGTTCGGAAAGAAAGGGAAGCAGGAGCTGGAGTTCCAGTCCGTACTCGACCA GGACTTGACCAATTCGAGAGCCGTTCAAATTGGGGAGAAGAAGATGCAGAATTGGGAAGAAGAAGATGTTGAGAGGCGAATCCGTGGAAGAGTGAAGTCG AGACGACGAGAATTAGCTAAGAGATCGAGCTTACTGGCGAAGCAAGTGATCAGCGTTAGGTCTGCGCTTAGCTTGGGTTTCATTTCCCAGCTCTGGGTCG ACCCTACAAATTGGGTGGTCATGGCTGTTGAGGTGAGACCAAACTTGCTCTCTGGAGAATCAGCAAGGTTTCGTCTCCAACACATTCGCCAGGTTGGAGA TGTTGTGCTGGTTAAAGACGATAATGTATTGGATCATGACTTGAACATACTTGGCCTCGAGACATTGGTCGGGTACCAAGTCTTCACACCTAGCCAACGA AATATCGGCAAGGTACGGGGATTCTCTTTCAACATCAATTCTGGCACCGTGGAATCACTCGAGCTCGATTCGTTCGGGATCTCCATCATCCCATCCAGTT TGGTGAGTACATACACACTGCCTGCTGAGGATGTCGTCGAGGTTTTCCAGGACATAGTGATTGTGCATGAAGCTGCAGCATCTCGAATCCAAAGGCTAAC TAAGGGTTTGTGGGATGCCCGGCCTATGGATGCTTACGAAGACGAAGTGGAAGAGTATGCAGATACCGAAACTGGCCCGACGAAGAGGAGGAGGGAAAGA TCGAGTCCGAAAATTGTCGAACTGGATTCGAGAGAGGATGAATGGGAGCTGCCAATGGACTACTTATGA
AA sequence Show only first row Show all	>Lus10014180 pacid=23152893 polypeptide=Lus10014180 locus=Lus10014180.g ID=Lus10014180.BGIv1.0 annot-version=v1.0 MGSTHLLLQCNLYPLINPHPKPTNPRFSSVCASGRRTSHGEMGPQYDELGFGKKGKQELEFQSVLDQDLTNSRAVQIGEKKMQNWEEEDVERRIRGRVKS RRRELAKRSSLLAKQVISVRSALSLGFISQLWVDPTNWVVMAVEVRPNLLSGESARFRLQHIRQVGDVVLVKDDNVLDHDLNILGLETLVGYQVFTPSQR NIGKVRGFSFNINSGTVESLELDSFGISIIPSSLVSTYTLPAEDVVEVFQDIVIVHEAAASRIQRLTKGLWDARPMDAYEDEVEEYADTETGPTKRRRER SSPKIVELDSREDEWELPMDYL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38570			unknown protein		Lus10014180 [exp]	0	1
AT1G74410			RING/U-box superfamily protein...		Lus10021628 [exp]	2.0	0.9236
AT5G15802			unknown protein		Lus10008785 [exp]	4.0	0.9039
AT3G17930			unknown protein		Lus10042280 [exp]	4.2	0.9244
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10006406 [exp]	5.6	0.8921
AT2G24020			Uncharacterised BCR, YbaB fami...		Lus10015490 [exp]	6.3	0.9318
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026152 [exp]	7.3	0.9138
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10003849 [exp]	7.7	0.9280
AT5G38510			Rhomboid-related intramembrane...		Lus10023145 [exp]	9.2	0.9019
AT2G01918		PQL3	PsbQ-like 3 (.1)		Lus10002286 [exp]	9.8	0.9198
					Lus10023773 [exp]	10.2	0.9143

Compare expression of checked genes

Lus10014180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.