Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08720 306 / 2e-100 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 289 / 1e-93 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT2G20050 114 / 3e-27 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) AT3G52890 111 / 3e-26 KIPK KCBP-interacting protein kinase (.1.2) AT2G25880 105 / 5e-26 ATAUR2 ataurora2 (.1.2) AT5G58140 110 / 6e-26 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 108 / 2e-25 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT5G03640 107 / 5e-25 Protein kinase superfamily protein (.1) AT1G79250 105 / 2e-24 AGC1.7 AGC kinase 1.7 (.1.2) AT1G48490 105 / 2e-24 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022732 [exp] 601 / 0 AT3G08720 401 / 1e-137 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10025213 [exp] 407 / 1e-135 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10021386 [exp] 283 / 5e-94 AT3G08720 445 / 4e-157 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10033125 [exp] 261 / 7e-82 AT3G08720 515 / 1e-179 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10036653 [exp] 249 / 2e-76 AT3G08720 515 / 1e-178 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10031906 [exp] 136 / 1e-34 AT1G48490 1358 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10018122 [exp] 129 / 3e-32 AT3G45780 1191 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10036144 [exp] 121 / 2e-29 AT3G45780 1061 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10001604 [exp] 113 / 7e-27 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G138400 [exp] 333 / 1e-110 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.006G109600 [exp] 331 / 6e-110 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.012G073700 [exp] 274 / 9e-88 AT3G08720 483 / 1e-168 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.019G061800 [exp] 196 / 2e-61 AT3G08720 197 / 8e-62 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.009G170550 [exp] 105 / 2e-26 AT5G58140 400 / 1e-134 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.004G209700 [exp] 109 / 2e-25 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.009G146700 [exp] 108 / 4e-25 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.010G232800 [exp] 107 / 4e-25 AT3G10540 834 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Potri.004G186300 [exp] 107 / 5e-25 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1) Potri.001G344600 [exp] 105 / 2e-24 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00433 [flax] [poplar] Pkinase_C Protein kinase C terminal domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10014181 pacid=23152951 polypeptide=Lus10014181 locus=Lus10014181.g ID=Lus10014181.BGIv1.0 annot-version=v1.0 ATGGTTTCCTCAACTGTAACTGGTTATTCAAGATCAAACAAACCTCTGCAGATCGAGCTGTTGTTCCCTGTTACCACTCCGGATCATGTTTTTGTTAACG ACCACTTGGAGCTGGACTTTTCCGATGTCTTCGGTCCTCTGCCGGTGCAGGGATCACTTGAATCCAACTTAGATTGTGAATGTGTTTATGATGATCCTGT TGTGATCCACAACCGTTCGCATTCCTTGGTTGGCCCTTCTTCGTACGTAAGCCAGTCGCTGAAGCTCAGCAGGCTCACTCTGGATGAGACAGATTGCGAT CTGCAGGAAAAAACCATTAAGGAGCTCCAGGAATCATCCTCGGTGGACGATGTTGCTGACATTGCCAGTGAAGAATCTGTAAAGGACTCTGCCGCTGTAG GCATTGAAGACTTTGAGGTTTTGAAGGTTGTTGGTCAAGGTGCATTTGGGAAAGTTTACCAGGTCAGGAAAAAGGGAACGTGTGATATATTTGCTATGAA GGTTATGAGGAAGGACAAGATAGTTGAAAATGATCAAGTTGAATACATGAAAGCTGAGAGGGAAATTCTGTCAAAAGTTGACCACCCCTTCATTGTCCAG CTCAAATACTCATTCCAGGTTATGCTGACTGATTTTGGCCTGGCCAAAGAATTCGACGACAATACGAGATCCAACTCGATGTGTGGAACTGTAGAATATA TGGCGCCTGAAATTGTTCAAGGGAAGGGCCATGATAAGGCTGCTGATTGGTGGAGTGTTGGCATTTTGCTGTATGAGATGCTAACTGGCAAGCCTCCTTT CATTGGTGGAAACAGAGGTAAAATTCAGCAGAAGATAGTAAGAGAAAAGATAAAGTTGCCGGCTTTCTTGTCAAGTGATGCTCATAGTCTGCTTAAAGGG TTGCTACAGAAGGAATCGAGCAGGCGGCTAGGGTGCGGAGCTAAGGGGAGTCGAGAAATCAAGGATCACAAATGGTTCAAGCCAATCAATTGGAGGAAAC TAGAGGGAAGGGAAGTGGAGCCGAGTTTCCGTCCGAATGTAGCTGGGAAGGACTGCACTGCCAACTTCGAGAAGCGATGGACCGACATGCCATTGTCCGA TTCTCCAGCTGCTAGCCCCAAGATCACGGTAGCAAATCCCTTTGGGGACTTCACTTACGTGAGACCTACTGGCTCTTTCCTTCAAAATGGTAGCTTCTTG TATTAG
AA sequence Show only first row Show all	>Lus10014181 pacid=23152951 polypeptide=Lus10014181 locus=Lus10014181.g ID=Lus10014181.BGIv1.0 annot-version=v1.0 MVSSTVTGYSRSNKPLQIELLFPVTTPDHVFVNDHLELDFSDVFGPLPVQGSLESNLDCECVYDDPVVIHNRSHSLVGPSSYVSQSLKLSRLTLDETDCD LQEKTIKELQESSSVDDVADIASEESVKDSAAVGIEDFEVLKVVGQGAFGKVYQVRKKGTCDIFAMKVMRKDKIVENDQVEYMKAEREILSKVDHPFIVQ LKYSFQVMLTDFGLAKEFDDNTRSNSMCGTVEYMAPEIVQGKGHDKAADWWSVGILLYEMLTGKPPFIGGNRGKIQQKIVREKIKLPAFLSSDAHSLLKG LLQKESSRRLGCGAKGSREIKDHKWFKPINWRKLEGREVEPSFRPNVAGKDCTANFEKRWTDMPLSDSPAASPKITVANPFGDFTYVRPTGSFLQNGSFL Y

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10014181 [exp]	0	1
AT1G51540			Galactose oxidase/kelch repeat...		Lus10033376 [exp]	3.0	0.7636
AT5G58300			Leucine-rich repeat protein ki...		Lus10021673 [exp]	4.9	0.7582
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Lus10003066 [exp]	5.3	0.6627
AT1G75420			UDP-Glycosyltransferase superf...		Lus10024281 [exp]	11.4	0.7066
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Lus10033080 [exp]	20.3	0.7283
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10039895 [exp]	23.3	0.7411
AT2G45790		ATPMM	phosphomannomutase (.1)		Lus10009825 [exp]	35.9	0.6719
AT1G52630			O-fucosyltransferase family pr...		Lus10036089 [exp]	43.5	0.6507
AT1G30630			Coatomer epsilon subunit (.1)		Lus10003497 [exp]	44.2	0.6773
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10017116 [exp]	45.2	0.6763

Compare expression of checked genes

Lus10014181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.