Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51110 228 / 3e-76 Transcriptional coactivator/pterin dehydratase (.1.2) AT1G29810 93 / 1e-23 Transcriptional coactivator/pterin dehydratase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022731 [exp] 334 / 5e-118 AT5G51110 251 / 5e-85 Transcriptional coactivator/pterin dehydratase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G112400 [exp] 252 / 1e-85 AT5G51110 239 / 2e-80 Transcriptional coactivator/pterin dehydratase (.1.2) Potri.015G110500 [exp] 243 / 7e-83 AT5G51110 229 / 2e-77 Transcriptional coactivator/pterin dehydratase (.1.2) Potri.011G078900 [exp] 93 / 2e-24 AT1G29810 201 / 3e-67 Transcriptional coactivator/pterin dehydratase (.1) Potri.001G352800 [exp] 90 / 2e-22 AT1G29810 224 / 3e-75 Transcriptional coactivator/pterin dehydratase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01329 [flax] [poplar] Pterin_4a Pterin 4 alpha carbinolamine dehydratase
Representative CDS sequence Show only first row Show all	>Lus10014182 pacid=23152864 polypeptide=Lus10014182 locus=Lus10014182.g ID=Lus10014182.BGIv1.0 annot-version=v1.0 ATGGCCACCTCCTACCAAGCGCTCTTCTTTTCTCTTCCCCTTCCTCCCAAGCTTTCTCCATCTTTCAAAATCTCCCCCGGCGTTCCTAGTTTGAAGAGAA CTGGCATCCTCAGAACCCGCCTGGCAGCCGGTGGCGGCGACTTGGGAGATTTCGGGGCAAGAGACCCATTTCCGGCAGAGATAGAAAGCCGATTCGGAGA GAAAGTGCTCGGAAACAGTGACTTGGAACACAAAATCTTGATTCCAAACGTTTCAGCAATGTCCCTAGCCCAGCTGGAGTGTTCCCCTGTTTCTCCAGTG CAGCCTCCCATGTCCAAGGACGACGCCCAAAAGCTCTTGAAGAAGGTAGTAGGGTGGAGATTGGTGGAGGAATCAGGAGGTATGAAGCTGCAATGCTTGT GGAAATTGAGGGATTTCAGCAGCGGAGTTGAACTTATCAACAGAATCCACAAAGTCTGTGAGGGGAATTCTGGACATTTCCTTAACCTGCATATAGAACA GCCTAACCAAGTCAGAGCCGAGCTATGGACTTCCTCGATCGGAGGGTTGAGCATGAACGATTTCATCATTGCTGCGAAGATAGATGGGATTAAGACCTCT GATCTTGCTCCTAGGAAGCGAGTTTGGGCTTAA
AA sequence Show only first row Show all	>Lus10014182 pacid=23152864 polypeptide=Lus10014182 locus=Lus10014182.g ID=Lus10014182.BGIv1.0 annot-version=v1.0 MATSYQALFFSLPLPPKLSPSFKISPGVPSLKRTGILRTRLAAGGGDLGDFGARDPFPAEIESRFGEKVLGNSDLEHKILIPNVSAMSLAQLECSPVSPV QPPMSKDDAQKLLKKVVGWRLVEESGGMKLQCLWKLRDFSSGVELINRIHKVCEGNSGHFLNLHIEQPNQVRAELWTSSIGGLSMNDFIIAAKIDGIKTS DLAPRKRVWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51110			Transcriptional coactivator/pt...		Lus10014182 [exp]	0	1
AT5G58330			lactate/malate dehydrogenase f...		Lus10037935 [exp]	1.4	0.9629
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10004151 [exp]	2.0	0.9313
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030873 [exp]	2.4	0.9499
AT5G51110			Transcriptional coactivator/pt...		Lus10022731 [exp]	4.2	0.9383
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Lus10011147 [exp]	4.5	0.9265
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Lus10034503 [exp]	5.3	0.9014
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030615 [exp]	7.0	0.9233
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10011941 [exp]	8.7	0.8763
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10007840 [exp]	8.7	0.9000
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10028471 [exp]	8.9	0.8999

Compare expression of checked genes

Lus10014182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.