Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01930 639 / 0 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT4G28320 399 / 1e-136 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT5G66460 397 / 1e-135 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT3G10900 386 / 9e-132 Glycosyl hydrolase superfamily protein (.1) AT2G20680 385 / 5e-131 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT3G10890 384 / 5e-131 Glycosyl hydrolase superfamily protein (.1) AT1G02310 358 / 1e-120 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT3G30540 282 / 2e-92 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039833 [exp] 414 / 1e-142 AT2G20680 633 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10007900 [exp] 412 / 6e-141 AT5G66460 417 / 4e-143 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10030347 [exp] 411 / 9e-141 AT5G66460 422 / 2e-145 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10031650 [exp] 409 / 2e-140 AT2G20680 655 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10018598 [exp] 407 / 8e-140 AT2G20680 627 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10033687 [exp] 406 / 2e-139 AT2G20680 644 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10014288 [exp] 405 / 1e-138 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10025995 [exp] 409 / 1e-136 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007210 [exp] 387 / 3e-132 AT5G66460 401 / 5e-138 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G138600 [exp] 731 / 0 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 723 / 0 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.007G022000 [exp] 409 / 2e-140 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G120500 [exp] 402 / 8e-138 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.013G130400 [exp] 402 / 1e-137 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.005G229600 [exp] 394 / 8e-135 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.002G184500 [exp] 389 / 8e-133 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.006G009400 [exp] 368 / 7e-124 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 275 / 4e-89 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1) Potri.016G014801 [exp] 194 / 3e-59 AT2G20680 231 / 2e-74 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Lus10014184 pacid=23152895 polypeptide=Lus10014184 locus=Lus10014184.g ID=Lus10014184.BGIv1.0 annot-version=v1.0 ATGGGACACCGATTTCGGCTCACCTCACTGTTCCTTCCCGTCCTGCTGATCATCGTCTCCCCAAGTCACGCACGATCGGATGCTCCAGGATCCAGGATCG ATCACGATCACGATGTGGAGGGTGATGAAGGATGGGAGATGGTTGCAAAGAAAGGGAACCAATTTGTGCTGAATGATCAACCATTCTATGTCAATGGCTT TAACACCTACTGGCTGATGGTATTATCGGCCGATCAATCGACCCGAACCAAGGTCTCTCAGCTCTTCCAGCAGGCTTCGTCGGTGGGACTCACTGTCTGC AGAACGTGGGCTTTCAACGATGGACAATGGCGCGCGCTTCAGAAATCCCCTGGTGTCTATGATGAGGACGTTTTCAAGGCATTGGACTTCGTGGTGAGCG AAGCGAACAAGTACAAGATCAGACTGATACTGTCTCTCACCAATAACTGGGATGCCTATGGTGGCAAAGCTCAGTATGTCAAGTGGGGGAAGGAAGCAGG ATTCAATCTCACCTCCGACGACGACTTCTTCTCCCACCCGACACTCAGATCTTACTACAAAGCTCACGTCAAGATGGTGCTGACCCGAGTCAACACAATC ACTAACGTGACATACAAGGAAGACCCGACGATATTCGCCTGGGAGTTGATGAACGAGCCTCGTTGCACCTCTGACCCTTCAGGAGACAAGCTTCAGTCTT GGATCCAAGAAATGGCAGTGTATGTGAAAAGCATGGACCCAAAGCATTTGGTGGAGATTGGGTTGGAAGGCTTCTACGGTCCTTCGACCCCTGACCGGGC TCAGTTCAACCCAAACACGTACGCCACACAAGTGGGGACCGACTTCATCAGGAACCATCAGGTTCTTGGCGTCGATTTTGCTTCGGTACACATGTATGCA GACTCCTGGATATCACAAACAATCTCCGACACACACGTCCAATTCACCAAATCCTGGATGCAAGCACACATCGAGGATGCAGAGAAGTACCTGGGGATGC CGGTTGTATTCACCGAGTTCGGAGTTTCTACGAAGGACCAAGGTTACAACTCGTCGTTCAGGGACAGCCTCTACAAAACAGTGTACCAGACCCTCTTGAA CTCGACAAGAAAGGGTGGCAGCGGAGCTGGAAGCCTTATGTGGCAGCTTTTCCCCGAAGGAACCGATTACATGGACGACGGCTACGCTATTGTCCTATCG AAATCTCCCTCTACATCGAACATGATCTCACTCCACTCCACCCGGATCGCCATCTTCAACTCTCTGTGTTCCTGGAAATGCAAATGGGGCTGCAAAAAGA AGAAGAGCACACTGCAAGAAATCCTCTACCATGATGAGCTATGA
AA sequence Show only first row Show all	>Lus10014184 pacid=23152895 polypeptide=Lus10014184 locus=Lus10014184.g ID=Lus10014184.BGIv1.0 annot-version=v1.0 MGHRFRLTSLFLPVLLIIVSPSHARSDAPGSRIDHDHDVEGDEGWEMVAKKGNQFVLNDQPFYVNGFNTYWLMVLSADQSTRTKVSQLFQQASSVGLTVC RTWAFNDGQWRALQKSPGVYDEDVFKALDFVVSEANKYKIRLILSLTNNWDAYGGKAQYVKWGKEAGFNLTSDDDFFSHPTLRSYYKAHVKMVLTRVNTI TNVTYKEDPTIFAWELMNEPRCTSDPSGDKLQSWIQEMAVYVKSMDPKHLVEIGLEGFYGPSTPDRAQFNPNTYATQVGTDFIRNHQVLGVDFASVHMYA DSWISQTISDTHVQFTKSWMQAHIEDAEKYLGMPVVFTEFGVSTKDQGYNSSFRDSLYKTVYQTLLNSTRKGGSGAGSLMWQLFPEGTDYMDDGYAIVLS KSPSTSNMISLHSTRIAIFNSLCSWKCKWGCKKKKSTLQEILYHDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10014184 [exp]	0	1
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10032425 [exp]	1.0	0.9879
AT3G49070			Protein of unknown function (D...		Lus10039258 [exp]	1.7	0.9850
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	2.4	0.9877
					Lus10007415 [exp]	3.2	0.9812
AT5G03260		LAC11	laccase 11 (.1)		Lus10023189 [exp]	3.5	0.9825
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013932 [exp]	4.5	0.9759
AT4G34180			Cyclase family protein (.1)		Lus10031453 [exp]	4.9	0.9778
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039541 [exp]	4.9	0.9789
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10015461 [exp]	5.7	0.9528
AT4G34180			Cyclase family protein (.1)		Lus10001509 [exp]	6.0	0.9771

Compare expression of checked genes

Lus10014184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.