Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51550 1244 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT3G04690 817 / 0 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G28680 816 / 0 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT5G39000 751 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G38990 709 / 0 Malectin/receptor-like protein kinase family protein (.1) AT1G30570 631 / 0 HERK2 hercules receptor kinase 2 (.1) AT5G54380 627 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT3G46290 613 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G59700 594 / 0 Protein kinase superfamily protein (.1) AT5G61350 587 / 0 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022728 [exp] 1648 / 0 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 776 / 0 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10042537 [exp] 721 / 0 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10021998 [exp] 714 / 0 AT3G04690 929 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10032971 [exp] 685 / 0 AT3G51550 706 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10032976 [exp] 671 / 0 AT3G51550 682 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10003942 [exp] 662 / 0 AT3G51550 656 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10037887 [exp] 654 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10028140 [exp] 636 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G138700 [exp] 1294 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 1252 / 0 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 845 / 0 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 841 / 0 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 816 / 0 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096000 [exp] 815 / 0 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G095900 [exp] 813 / 0 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.013G042500 [exp] 803 / 0 AT3G04690 1036 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.005G055200 [exp] 799 / 0 AT5G28680 1026 / 0.0 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 797 / 0 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10014185 pacid=23152865 polypeptide=Lus10014185 locus=Lus10014185.g ID=Lus10014185.BGIv1.0 annot-version=v1.0 ATGAGGAGAAGAAGCTTACTCTGCTTCTGGGCTCTCCTCCTGTCGCTCTCCGCCGGCGAGCTCGGCTTCCTCCGAGCTCAGAACTACGCCCCCACCGACA AGATCCTCCTCAACTGCGGCGCCAACTCCGATCTCAACGACACCGATGGCCAGACATGGCATCCGGACGACAAGGGTTCCAAATACTTAACCCCGGCGGA CTCCTTAACCTCTCCCGCCTCATCTCAGAACCCCGGAGTCCCTCAGGTCCCCTTCATGACCGCCCGTATCTTCCGGTCGAACTTCACCTACACTTTCCCA GTCGGCTCCGGCCATAAGTTCCTCCGCCTCTACTTCTACCCGGCTTCCTACGGCAACAACCTCAACGCCACCGATGCTCTGTTCTCCGTCTCCGCCGGCT CCTTCACTCTGCTTAACAACTTCAGCGTCTCCCAAACAGCTTCGGCGCTCAATTGGGACGTCGTCGTGAAGGAATACTCCATCAACGTGGAAACCGAATC CGAATCTCTCAATGTAACTTTCTCTCCTTCCGCTACTAATTCCAGAGCTTTTGCTTTCGTTAATGGGATAGAGATTGTTTCCATGGATGATATCTATAGT TCTCCTGATGGATCTGTGCCTATTATCGGATCGAGTACTGGAACTTATACTATTGATAACTCATCTGCTCTTGAGAATGTCTACCGATTGAACGTCGGTG GTAACGACATATCTCCCTCGGGGGATACCGGTATGCTCCGATCTTGGGCGGATGATCAGGCTTACATTTTCAGTGCGGCGATTGGAGTTGTGCAGTCTTC CGATCCCGGGGTTAAGCTTTCGTATCCTTCCGGTACGCCTTCGTACATTGCTCCTGAGAATGTGTACATGACTGCTAGAACAATGGGGCCGACTCCTCAA TTCAATCGGAACTACAATCTGACTTGGATATTCAGCGTCGATTCGGGGTTCAATTACTTGGTTAGGCTTCACTACTGTGAGATGTCGACGAATGTGACGA AGAACAACCAGAGAGTGTTCAGTGTTTACATCAATAATCAGACCGCTGAGGCCGAATTCGACGTTGTGGCATATGCAGATGGGAAGAGTGGTGTAGCTGT TCATAAGGATTATGTGGTGCTTGTCAATGGCGGTAAGAATCCCCAGGAGGATCTTTGGCTCGCGCTTACCCCGAATGATCGGAACAAGCCGGAGTTCTAT GATGCTATATTGAATGGTGTGGAGATATTCAAGATAAGTACTAGTGGCTCTAAGAATCTTGCTGGGCCGAATCCGGTTCCTCTTCCGAAACAGGAGATAA TCGATCCGTCGAGGGTTAGACCGGCTAATAAGCATTCCAAAGCCAAAGTCGGAATCATAATCGGAGGTGTGCTCGGTGGTGTTTTAGCTGCTTTAGCTGT TGGTTACTGTTTGTTCTGTGTGTATCCTCGTAGAAGGCAAGGGAAGGAAACCGGTTCAAGCGATGGTCCCTCCGGTTGGCTTCCTCTATCTCTATACGGG AACTCGCACTCGGGCGGTTCGGCCAAGACGAACACAACTGGCACGGGGAGCTATGCTTCTTCGATGCCGTCGAATCTCTGCCGTCATTTCTCGTTCGCCG AGATCAAGGCTGCCACAAACAATTTCGACGACTCGAGGACCCTCGGGGTGGGAGGGTTTGGAAAAGTTTACAGAGGTGAGGTTGACGGCGGCACGACAAA AGTGGCCATCAAACGTGGTAACCCGCTCTCGGAGCAAGGCGTGCACGAGTTCCAGACTGAGATCGAGATGCTCTCGAAGCTTCGACATCGCCACCTTGTT TCTTTGATAGGGTACTGTGAGGAGAATTGCGAGATGATCTTGGTCTACGACTACATGGCGTACGGGACATTGAGGGAGCATTTGTACAAGACCTCAAAGC CTCCGTTGCCATGGAAGCAAAGGCTAGAGATTTGCATCGGTGCTGCTCGCGGTCTGCATTACCTTCACACTGGTGCGAAACACACGATCATTCACCGAGA TGTGAAGACGACCAACATTTTGTTGGACGAGAAGTGGGTGGCGAAGGTTTCGGATTTCGGATTGTCAAAAACCGGTCCGATGCTGGATCATACTCACGTA AGCACGGTCGTGAAGGGGAGTTTTGGGTATTTGGATCCGGAATACTTCAGGAGGCAGCAGCTGACCGAGAAATCGGATGTCTACTCGTTCGGCGTGGTTC TATTTGAGATTTTATGTGCTCGACCCGCACTCAACCCGACTCTACCGAAAGAGCAAGTGAGCCTTGCGGAATGGGCAGTTTACTGCTACAAGAAGGGAAT GCTGGACGAAATCACTGATCCATACCTCAAGGGCAAGATAGCACCAGAATGCTTCAAGAAGATCGCCGAGACAGCAATGAAATGCGTGGCCGACAATGGC ACCGAGCGGCCCTCAATGGGAGACGTGCTGTGGAACCTCGAGTTTGCCCTTCAGCTTCAGGAGAGTGCAGAAGAGAGCGGCAAGGTCTGCAGCAGTGGAA TCGAGAAGGGCGACGAGGAGGAGCCATTCACTGGTAAGAGGAAGAAGGACCCGAACGAATTGCCCGGGTTCGATGTGAACGGGTCCGATTCGAGAACGAG CGGGATGAGCATGAGTATCGGAGGGAGGAGCCTTGCGAGCGAAGACTCGGACGGGTTAACCCCGAGTGCTGTGTTCTCGCAGATCATGAACCCGAAGGGG CGTTGA
AA sequence Show only first row Show all	>Lus10014185 pacid=23152865 polypeptide=Lus10014185 locus=Lus10014185.g ID=Lus10014185.BGIv1.0 annot-version=v1.0 MRRRSLLCFWALLLSLSAGELGFLRAQNYAPTDKILLNCGANSDLNDTDGQTWHPDDKGSKYLTPADSLTSPASSQNPGVPQVPFMTARIFRSNFTYTFP VGSGHKFLRLYFYPASYGNNLNATDALFSVSAGSFTLLNNFSVSQTASALNWDVVVKEYSINVETESESLNVTFSPSATNSRAFAFVNGIEIVSMDDIYS SPDGSVPIIGSSTGTYTIDNSSALENVYRLNVGGNDISPSGDTGMLRSWADDQAYIFSAAIGVVQSSDPGVKLSYPSGTPSYIAPENVYMTARTMGPTPQ FNRNYNLTWIFSVDSGFNYLVRLHYCEMSTNVTKNNQRVFSVYINNQTAEAEFDVVAYADGKSGVAVHKDYVVLVNGGKNPQEDLWLALTPNDRNKPEFY DAILNGVEIFKISTSGSKNLAGPNPVPLPKQEIIDPSRVRPANKHSKAKVGIIIGGVLGGVLAALAVGYCLFCVYPRRRQGKETGSSDGPSGWLPLSLYG NSHSGGSAKTNTTGTGSYASSMPSNLCRHFSFAEIKAATNNFDDSRTLGVGGFGKVYRGEVDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLV SLIGYCEENCEMILVYDYMAYGTLREHLYKTSKPPLPWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPMLDHTHV STVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEILCARPALNPTLPKEQVSLAEWAVYCYKKGMLDEITDPYLKGKIAPECFKKIAETAMKCVADNG TERPSMGDVLWNLEFALQLQESAEESGKVCSSGIEKGDEEEPFTGKRKKDPNELPGFDVNGSDSRTSGMSMSIGGRSLASEDSDGLTPSAVFSQIMNPKG R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10014185 [exp]	0	1
AT5G23340			RNI-like superfamily protein (...		Lus10013444 [exp]	1.0	0.8586
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Lus10038739 [exp]	6.9	0.8214
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10004040 [exp]	11.0	0.8457
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010933 [exp]	11.6	0.8283
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10036485 [exp]	15.0	0.8393
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009248 [exp]	19.0	0.8305
AT1G47380			Protein phosphatase 2C family ...		Lus10006485 [exp]	20.0	0.7978
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10012344 [exp]	22.4	0.8225
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10037049 [exp]	24.5	0.7750
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10011882 [exp]	25.5	0.7583

Compare expression of checked genes

Lus10014185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.