Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36305 275 / 4e-92 RCE1, ATFACE2, ATFACE-2 RAS-CONVERTING ENZYME 1, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME 2, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME-2, farnesylated protein-converting enzyme 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022724 [exp] 336 / 7e-116 AT2G36305 300 / 8e-101 RAS-CONVERTING ENZYME 1, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME 2, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME-2, farnesylated protein-converting enzyme 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083300 [exp] 323 / 2e-111 AT2G36305 382 / 1e-133 RAS-CONVERTING ENZYME 1, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME 2, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME-2, farnesylated protein-converting enzyme 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [flax] [poplar] Peptidase_U PF02517 [flax] [poplar] CPBP CPBP intramembrane metalloprotease
Representative CDS sequence Show only first row Show all	>Lus10014190 pacid=23152849 polypeptide=Lus10014190 locus=Lus10014190.g ID=Lus10014190.BGIv1.0 annot-version=v1.0 ATGGAAGCCGAAGGAGCAGGTTTGTCTAAATCGGTGGCGGTGCTAGCCTGCACCGCCATGGCATTGTTGTACGTGGCGATACTCTATGCTCCGACTCTGA TCCTCCGCCTTCCTCAGCCTTCATCCTTGACGGCGTTCATGGTCCGGCGGTTCGTCTGCGCCGCCATCTCTTCCGTCGTGTCTATTGCTGCCTGTGCTCT TATACTTCCGGTCAGTAGCACCGAGATACCTTCTCCTTCTCTTTTAGGCATCTATGGAATCAGACTGGATCACATATGGCAAGCTGTGGTCTACCCTCTT TCCTTGACTTCCTTAATGTACGCTGGATCTTTAGTACTCAAGCTTTTGCAAGCAATGGAGTCATGGACGGAACATACTGAACAAGGTGGACACCTACTTG ACTTTGTGAAGGATCAACTACAAGACTTCCGCACTTGGATGTCTTCAACTGTCTCAAATGTCTTGGCTTGGCGTAACTACGTTGTGGCTCCAATAACAGA GGAGTTGGTCTTTAGAGCATGCATGATTCCTTTACTTCTATGTGGAGGATTCAAGCCCTACATTGTCATCTGTCTGTGCCCTGTTCTTTTCAGCTTGGCT CATTTGAACCACTGGATGGAGATTTATTGCCAGCACAACTATAGCTTCATGAAAGCATTGCTGGTTGTAGGTCTCCAGCTTGGGTACACTGTGATCTTCG GTTCCTATGCCTCGTTTCTTTTCATTCGAACAGGTGAATGTTTTTCTTCTCTCAATCTACTTCGGCGTACCCTGTCTACAAACTGCTTCCTGCTGATAGG TTTATCTAGCTGA
AA sequence Show only first row Show all	>Lus10014190 pacid=23152849 polypeptide=Lus10014190 locus=Lus10014190.g ID=Lus10014190.BGIv1.0 annot-version=v1.0 MEAEGAGLSKSVAVLACTAMALLYVAILYAPTLILRLPQPSSLTAFMVRRFVCAAISSVVSIAACALILPVSSTEIPSPSLLGIYGIRLDHIWQAVVYPL SLTSLMYAGSLVLKLLQAMESWTEHTEQGGHLLDFVKDQLQDFRTWMSSTVSNVLAWRNYVVAPITEELVFRACMIPLLLCGGFKPYIVICLCPVLFSLA HLNHWMEIYCQHNYSFMKALLVVGLQLGYTVIFGSYASFLFIRTGECFSSLNLLRRTLSTNCFLLIGLSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Lus10014190 [exp]	0	1
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10027634 [exp]	6.0	0.7616
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Lus10022404 [exp]	7.5	0.7141
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Lus10006559 [exp]	11.2	0.7147
AT3G15410			Leucine-rich repeat (LRR) fami...		Lus10043086 [exp]	20.9	0.6859
AT1G14300			ARM repeat superfamily protein...		Lus10036742 [exp]	21.3	0.7579
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10034734 [exp]	37.8	0.7117
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10000665 [exp]	55.5	0.6534
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10000138 [exp]	86.4	0.6289
					Lus10035514 [exp]	96.1	0.6046
AT3G57360			unknown protein		Lus10032322 [exp]	101.8	0.6338

Compare expression of checked genes

Lus10014190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.