Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36290 402 / 8e-140 alpha/beta-Hydrolases superfamily protein (.1) AT3G48410 401 / 5e-139 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 389 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 384 / 7e-133 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 374 / 5e-129 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 364 / 1e-124 alpha/beta-Hydrolases superfamily protein (.1) AT5G22460 331 / 4e-112 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03240 261 / 7e-85 alpha/beta-Hydrolases superfamily protein (.1) AT3G44510 255 / 2e-82 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03230 252 / 3e-81 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022722 [exp] 662 / 0 AT3G48410 429 / 4e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 533 / 0 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10021371 [exp] 528 / 0 AT3G48410 473 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 400 / 3e-137 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 393 / 4e-136 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 391 / 2e-135 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 390 / 2e-135 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 390 / 6e-135 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10039775 [exp] 383 / 2e-132 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237700 [exp] 430 / 8e-151 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 429 / 2e-150 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 411 / 5e-143 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 408 / 3e-142 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 407 / 8e-142 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G203700 [exp] 341 / 6e-116 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164900 [exp] 336 / 5e-114 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164600 [exp] 298 / 4e-99 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G086200 [exp] 138 / 3e-36 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G131300 [exp] 137 / 1e-35 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10014191 pacid=23152902 polypeptide=Lus10014191 locus=Lus10014191.g ID=Lus10014191.BGIv1.0 annot-version=v1.0 ATGCTATCGGCGATTTCGTTGTTCTTGCCTCAGGGAGGCCCGATCAGATTCATAATCTCTGGTGTCTTCGTGATTTGGGCAACTCGGGCATGCACCAATC TGATGGTGGAAGTGGCACAAGGTGGAGAGGAGCACCGGATCTTTCCTACAGTACTTCTGGTTTTGCTTGCTGTGATTTTGGCTTGGGGTTATCAAGCAAT CCAACCACCTCCACCTAAGATATGCGGCACTCCTGGTGGGCCGCCAATAACAGCACCGAGAATCAAGCTTCGGGACGGGAGGCATATGGCTTACCAAGAA CGCGGTGTCTCGAAGGATCTTGCCAAGATTAAAGTGATCTTCGTCCATGGTTTGAATGTTTGCAGGCTTGACGATGTCATTCCTGCCAACACTTCTCCTG AACTTGTTCAGGAGCTGGGGATCTATTTTGTGTCTTACGACAGACCTGGCTACGGCGAGAGCGATCCTCATCCATCAAGAACTGTGAAGAGCCAGATTTC GGATATCGAAGAACTTGCTGACCAATTGGGACTCGGCCCGAAATTCTATCTGATAGGTTACTCACTTGGTGGCCAGTTGGCATGGGGTTCCCTGAAGTAC ATTCCTCACAGGCTAGCAGGGTTGACATTGTTGACTCCTGCAATTAACTACTATTGGCCCGGTTTTCCTTCCGAGTTATCTTCTCAAGCCTTGTTCCGAA ACCCTCCTAGCGACTATTGCGCTTATCTCGTGGCTCATTACTCTCCGTGGCTAACTCATTGGTGGAACACCCAGAAATGGTTTCCGATTTTCGGAGGATT CAGCAAAAGCCCCCATATTTTCTCTCGCCAAGACATTGAAATCGCCTTGTCTCGTGCGAAGAAAAGTAACATGTCCTATACGCGACAGCAAGGAGAATAC GAGTCGATCCACCGTGACTTCAACATAGGAGCTGGGTTGACCTGGGAATTTGATCCGTTGGATCTGGAGAACCCTTTCCCAGACAATGAAGTCTCTGTCC ATCTGTGGCAAGGAGATGAAGATAGGATCGTGCCTGCTACGTTGCAGCGATACATTGCTAAGCGGCTTTCGTGGGTTCGGTATCACGAGCTTCCGGGTTC CGGACATGCTTTTCCTCATATGGATGGGATGGCTGACATCATTGTTAAGACTATGCTAACTGGGAAGCAGTGA
AA sequence Show only first row Show all	>Lus10014191 pacid=23152902 polypeptide=Lus10014191 locus=Lus10014191.g ID=Lus10014191.BGIv1.0 annot-version=v1.0 MLSAISLFLPQGGPIRFIISGVFVIWATRACTNLMVEVAQGGEEHRIFPTVLLVLLAVILAWGYQAIQPPPPKICGTPGGPPITAPRIKLRDGRHMAYQE RGVSKDLAKIKVIFVHGLNVCRLDDVIPANTSPELVQELGIYFVSYDRPGYGESDPHPSRTVKSQISDIEELADQLGLGPKFYLIGYSLGGQLAWGSLKY IPHRLAGLTLLTPAINYYWPGFPSELSSQALFRNPPSDYCAYLVAHYSPWLTHWWNTQKWFPIFGGFSKSPHIFSRQDIEIALSRAKKSNMSYTRQQGEY ESIHRDFNIGAGLTWEFDPLDLENPFPDNEVSVHLWQGDEDRIVPATLQRYIAKRLSWVRYHELPGSGHAFPHMDGMADIIVKTMLTGKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10014191 [exp]	0	1
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10014148 [exp]	1.7	0.9845
AT1G45063			copper ion binding;electron ca...		Lus10006657 [exp]	4.9	0.9700
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10030530 [exp]	7.6	0.9809
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10017522 [exp]	9.4	0.9739
AT2G01340		At17.1	unknown protein		Lus10036005 [exp]	13.3	0.9764
AT2G26530		AR781	Protein of unknown function (D...		Lus10021757 [exp]	16.0	0.9685
AT5G56960	bHLH	bHLH041	basic helix-loop-helix (bHLH) ...		Lus10017152 [exp]	17.4	0.9682
AT1G47670			Transmembrane amino acid trans...		Lus10003338 [exp]	18.6	0.9730
AT1G49860		ATGSTF14	glutathione S-transferase (cla...		Lus10036808 [exp]	18.7	0.9670
AT1G23300			MATE efflux family protein (.1...		Lus10026324 [exp]	19.4	0.9504

Compare expression of checked genes

Lus10014191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.