Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10080 263 / 2e-89 RmlC-like cupins superfamily protein (.1) AT3G04200 165 / 5e-51 RmlC-like cupins superfamily protein (.1) AT1G18980 163 / 3e-50 RmlC-like cupins superfamily protein (.1) AT3G05950 161 / 2e-49 RmlC-like cupins superfamily protein (.1) AT1G18970 159 / 2e-48 GLP4 germin-like protein 4 (.1) AT1G02335 156 / 1e-47 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT5G39130 153 / 3e-46 RmlC-like cupins superfamily protein (.1) AT5G39190 153 / 3e-46 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT3G04170 153 / 4e-46 RmlC-like cupins superfamily protein (.1) AT5G39160 152 / 6e-46 RmlC-like cupins superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022721 [exp] 302 / 1e-105 ND 210 / 2e-69 Lus10030047 [exp] 161 / 2e-49 AT3G05950 256 / 7e-87 RmlC-like cupins superfamily protein (.1) Lus10035280 [exp] 158 / 4e-48 AT3G05950 252 / 2e-85 RmlC-like cupins superfamily protein (.1) Lus10003267 [exp] 158 / 5e-48 AT5G39130 257 / 4e-87 RmlC-like cupins superfamily protein (.1) Lus10032016 [exp] 157 / 5e-48 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035278 [exp] 156 / 2e-47 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10035185 [exp] 156 / 2e-47 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10032015 [exp] 155 / 7e-47 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 154 / 1e-46 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G020800 [exp] 255 / 1e-86 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.010G238200 [exp] 253 / 8e-86 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.010G238100 [exp] 189 / 3e-60 AT3G10080 197 / 6e-64 RmlC-like cupins superfamily protein (.1) Potri.009G140350 [exp] 166 / 3e-51 AT5G39110 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Potri.009G140400 [exp] 166 / 4e-51 AT5G39110 247 / 3e-83 RmlC-like cupins superfamily protein (.1) Potri.019G026400 [exp] 164 / 2e-50 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026500 [exp] 164 / 2e-50 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026700 [exp] 163 / 5e-50 AT3G05950 286 / 1e-98 RmlC-like cupins superfamily protein (.1) Potri.013G051700 [exp] 162 / 8e-50 AT3G05950 298 / 2e-103 RmlC-like cupins superfamily protein (.1) Potri.013G051600 [exp] 162 / 1e-49 AT3G05950 296 / 1e-102 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10014192 pacid=23152867 polypeptide=Lus10014192 locus=Lus10014192.g ID=Lus10014192.BGIv1.0 annot-version=v1.0 ATGTTGCCAAAATCAACAATGATCCAACTCCAAACCCTCCCCCTCATCTTCCTCCTAGCTTCAACCTTGGTCCGATCCTCGGACCCGGACCCTGTCCAAG ACTTTTGCATCCCACCAAATCCTCCTCCTTCTTCTTCTCCTCCTTCCTCTCCAACCCACCACCACGCCGGCCAATGCAAGGAACCGTCGGAGGCCACAGC CGGAGACTTTGTGTTCTCCGGCTTGAAAGTCCCAGGCAACTTCTCCACCACTGGGTTCGCCTCCATACCGGTCAACCCAACCACATTCCCTGGGCTCAAC ACCTTGGGAATGTCGTTCGTCCGGGCCGACTTCCAGCCCGGGGCAGTCAACCCGCCCCACTTCCACCCGAGGGCGACCGAGATTGCCCACGTGGTGGAAG GCAGAGTCTACGCCGGGTTCGTGGACTCGAACAACAGGGTGTTCGCTCGGGTGCTTGAGAAGGGGGAGGTCATGGTTTTTCCAAGAGGGTTGGTCCATTT CCAGATGAATGTGGGTGAGAAGGATGCCACGATTTTCGGGAGCTTCAATGGGCAGAACCCTGGGAACCAGAGAATACCGGCCGCAGTTTTCGGGTCGGGT ATTGACAACTTGTTGCTCGAGAAGGCGTTCGGGTTGACCTCGAAGGAGGTTGTTTTGATGAGGAGGAGACTTGATCCTAAAGCTGCACCGATTATTAAAG CTTAG
AA sequence Show only first row Show all	>Lus10014192 pacid=23152867 polypeptide=Lus10014192 locus=Lus10014192.g ID=Lus10014192.BGIv1.0 annot-version=v1.0 MLPKSTMIQLQTLPLIFLLASTLVRSSDPDPVQDFCIPPNPPPSSSPPSSPTHHHAGQCKEPSEATAGDFVFSGLKVPGNFSTTGFASIPVNPTTFPGLN TLGMSFVRADFQPGAVNPPHFHPRATEIAHVVEGRVYAGFVDSNNRVFARVLEKGEVMVFPRGLVHFQMNVGEKDATIFGSFNGQNPGNQRIPAAVFGSG IDNLLLEKAFGLTSKEVVLMRRRLDPKAAPIIKA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10080			RmlC-like cupins superfamily p...		Lus10014192 [exp]	0	1
AT1G23040			hydroxyproline-rich glycoprote...		Lus10043475 [exp]	1.7	0.9135
AT3G45230			hydroxyproline-rich glycoprote...		Lus10037404 [exp]	3.7	0.9124
AT3G05320			O-fucosyltransferase family pr...		Lus10018291 [exp]	6.0	0.8858
AT5G66280		GMD1	"GDP-D-mannose 4,6-dehydratase...		Lus10028373 [exp]	8.0	0.8944
AT5G38450		CYP735A1	"cytochrome P450, family 735, ...		Lus10017595 [exp]	8.1	0.9122
AT3G06035			Glycoprotein membrane precurso...		Lus10010516 [exp]	9.9	0.8954
AT4G18540			unknown protein		Lus10013937 [exp]	11.2	0.8037
AT3G45230			hydroxyproline-rich glycoprote...		Lus10041306 [exp]	12.0	0.9010
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10010619 [exp]	13.6	0.8683
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10036886 [exp]	15.0	0.8969

Compare expression of checked genes

Lus10014192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.