Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36270 156 / 4e-43 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G49720 114 / 4e-28 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT3G19290 109 / 3e-26 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT3G56850 102 / 1e-24 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT3G44460 101 / 9e-24 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G34000 101 / 2e-23 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT1G45249 97 / 9e-22 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT5G44080 82 / 3e-17 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G41070 81 / 4e-17 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G03970 71 / 2e-13 bZIP GBF4 G-box binding factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022720 [exp] 285 / 3e-93 AT2G36270 312 / 2e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10017049 [exp] 205 / 8e-62 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10021369 [exp] 196 / 1e-58 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008928 [exp] 104 / 2e-26 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10028889 [exp] 107 / 4e-26 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10014066 [exp] 100 / 5e-23 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10006489 [exp] 100 / 8e-23 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10008929 [exp] 97 / 3e-22 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1) Lus10027897 [exp] 98 / 4e-22 AT3G19290 289 / 1e-93 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083000 [exp] 184 / 6e-54 AT2G36270 313 / 1e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.014G028200 [exp] 114 / 5e-28 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.002G125400 [exp] 109 / 3e-26 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.009G101200 [exp] 108 / 6e-26 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.010G248300 [exp] 104 / 5e-25 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.009G164500 [exp] 105 / 6e-25 AT3G44460 160 / 2e-46 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.004G140600 [exp] 104 / 3e-24 AT4G34000 321 / 8e-106 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.010G248100 [exp] 101 / 6e-24 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.008G010800 [exp] 96 / 4e-22 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.016G024000 [exp] 79 / 3e-16 AT3G56850 241 / 4e-79 ABA-responsive element binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10014194 pacid=23152857 polypeptide=Lus10014194 locus=Lus10014194.g ID=Lus10014194.BGIv1.0 annot-version=v1.0 ATGGGGGATCAAGAAATGAACTCCAACGGCGAAGTGGAATCGGCATTGCAGCTGGACAATCAATCCAACAACAACAAGAGCAACAATCCATTTCCTTCAC TGGGAAGGCAATCGTCAATCTACTCCTTGACGCTCGACGAATTCCAGCACACGCTATGCGGGGAAGGGGGGAAGAATTTCGGGTCGATGAATATGGATGA GTTCCTCAACAGCATCTGGACCGCCGAGGAGAATCAGCATCCCAATCCTGCGGCGGCGGCAGCAAATGTTTCACATGCGCCGCTGCCGGGCGGGAGCAGC AACGGTGGTGGATCGGGGGATCATTTGCCGGGTAGGGGGATATCGAAGCAGCCTAGCTTGCCTAGGCAGGGGTCGCTTTCTCTGCCGGAAAAGCTCTGCA GGAAGACGGTGGACGAGGTCTGGTCGGAGATTCACAGCAGGAACAGGAAATTCGGCGGCGGGCCGAGGAAGACCGGCGAGAATACCGAGGCTAATTCGAA TTCTCAGGTGAATGTTAGGAATAATTCCGAGTCTACCGCTCGGCAGCCGACTTTTGGGGAGATGACGCTCGAGGATTTCTTGATTAAAGCAGGGGTAGTT CGGGAACAACAATGCGGTGGTGGCGCTGCTCCATCGTATCTGCCGCCCCAGCAGTACGGCATGTTCCTTCCGCGTGGCGGCGGGAGCAGTGGGTCGATTT CTTACCCACTTCCGCCCCTTCCACCTTATAGTGGAAGGGTGGGAAATGGCGTTGTTGGAGGCGGCTACGCGCCACCTCCTCCACCATCGTCACAGTCGTT GGCGGTTGTCGGACCGGTTAGTCCGGTTTCGTCGGATGGGATGGTGGCGGCAAACATTGACGCCGTTGGGAATCATTACGGGATGGATATGGGCGGGTTG AGAGGGCGGAAGAGGATAATCGACGGTCCAGTGGAGAAAGTAGTCGAGCGCCGGCAGCGACGGATGATCAAGAACCGTGAATCCGCCGCTAGGTCTCGAG CTAGGAAGCAGGCGTATACCGTCGAGCTAGAAGCAGAATTGAACCAGTTAAAAGAAGAGAACAGGCAACTGAAGCAAGCACTAGCTGAGATGGAAAGGAA GAGGAAGCAACAGCTTTCGTGTGGTGCAGTACCTCGAGGAAATGAGATCGAAGGGACAGAGCAAGAAGGCGCAGGAGAAGCTGATGCTGATGAGGAGGAA TTTGAGTTGTCAATTATGATCCGGGATAATGACACATAG
AA sequence Show only first row Show all	>Lus10014194 pacid=23152857 polypeptide=Lus10014194 locus=Lus10014194.g ID=Lus10014194.BGIv1.0 annot-version=v1.0 MGDQEMNSNGEVESALQLDNQSNNNKSNNPFPSLGRQSSIYSLTLDEFQHTLCGEGGKNFGSMNMDEFLNSIWTAEENQHPNPAAAAANVSHAPLPGGSS NGGGSGDHLPGRGISKQPSLPRQGSLSLPEKLCRKTVDEVWSEIHSRNRKFGGGPRKTGENTEANSNSQVNVRNNSESTARQPTFGEMTLEDFLIKAGVV REQQCGGGAAPSYLPPQQYGMFLPRGGGSSGSISYPLPPLPPYSGRVGNGVVGGGYAPPPPPSSQSLAVVGPVSPVSSDGMVAANIDAVGNHYGMDMGGL RGRKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENRQLKQALAEMERKRKQQLSCGAVPRGNEIEGTEQEGAGEADADEEE FELSIMIRDNDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10014194 [exp]	0	1
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10006778 [exp]	1.7	0.9113
AT5G20935			unknown protein		Lus10013382 [exp]	4.2	0.9071
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10032585 [exp]	6.3	0.8880
AT5G16720			Protein of unknown function, D...		Lus10010755 [exp]	8.5	0.8878
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10028978 [exp]	9.9	0.8736
					Lus10040811 [exp]	10.4	0.8959
AT5G51260			HAD superfamily, subfamily III...		Lus10038847 [exp]	13.0	0.8905
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Lus10021736 [exp]	13.8	0.8796
AT3G05170			Phosphoglycerate mutase family...		Lus10024659 [exp]	15.3	0.8752
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10004289 [exp]	15.9	0.8873

Compare expression of checked genes

Lus10014194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.