Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52740 87 / 3e-22 unknown protein AT3G44450 66 / 2e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022717 [exp] 224 / 6e-76 AT3G52740 76 / 3e-18 unknown protein Lus10021366 [exp] 95 / 7e-25 AT3G52740 91 / 1e-23 unknown protein Lus10017046 [exp] 93 / 3e-24 AT3G52740 94 / 6e-25 unknown protein Lus10004872 [exp] 74 / 2e-17 AT3G52740 102 / 6e-29 unknown protein Lus10020614 [exp] 69 / 1e-15 AT3G52740 103 / 2e-29 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G163900 [exp] 81 / 4e-20 AT3G52740 101 / 7e-29 unknown protein Potri.004G202900 [exp] 80 / 3e-19 AT3G52740 100 / 1e-27 unknown protein Potri.009G164000 [exp] 80 / 3e-19 AT3G52740 95 / 2e-25 unknown protein Potri.004G203000 [exp] 79 / 9e-19 AT3G52740 90 / 1e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014197 pacid=23152917 polypeptide=Lus10014197 locus=Lus10014197.g ID=Lus10014197.BGIv1.0 annot-version=v1.0 ATGAAACCTCGTGAAGAAGAAGACGAAGAAGAATACCCATCTGAACCAGTAGCACTAGCACTCAAAGAAGCTCATGCATTAGTTCTTTCATCTAGCCACC ATACCATGGATCAAGAAAAGGGAAGTCAAGTCACCAAGCTAGACTGTAGCACCAATGGCGGCAGGGTAGAAGCCAGGGTGGAGGAACCCAGTGACGTAAC CAGGGGTGAGCGAACCCGTGCCACTGCCGAAGGTCCTCAAGTCCTAGAACGCCAAACCCGATCTTCGATCATTTTGGAAACCGCAACCGTGGAGGAATCT GGGGGAAGTTGGAGTGGGAGAGAGAAGCTGAAGAAACACAGGATGGAAGTTGCAGGGAAGGTATGGATTCCAGAGACTTGGGGACAGGAAAAGCTGCTTA AGGATTGGATTGATTGTTCTGCTTTTGATGCTTCTTTAATCTCAACTTCATCAGCTCGAGATGCTCTGGTTCAGCAAGGTTTGAGTACCTGTAAAACACC TCCTCTAATCCCAGGAGATTAA
AA sequence Show only first row Show all	>Lus10014197 pacid=23152917 polypeptide=Lus10014197 locus=Lus10014197.g ID=Lus10014197.BGIv1.0 annot-version=v1.0 MKPREEEDEEEYPSEPVALALKEAHALVLSSSHHTMDQEKGSQVTKLDCSTNGGRVEARVEEPSDVTRGERTRATAEGPQVLERQTRSSIILETATVEES GGSWSGREKLKKHRMEVAGKVWIPETWGQEKLLKDWIDCSAFDASLISTSSARDALVQQGLSTCKTPPLIPGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52740			unknown protein		Lus10014197 [exp]	0	1
					Lus10026628 [exp]	1.0	0.9564
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018350 [exp]	1.4	0.9392
AT1G31740		BGAL15	beta-galactosidase 15 (.1)		Lus10043422 [exp]	2.8	0.9242
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10038020 [exp]	3.0	0.9273
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007659 [exp]	6.0	0.8997
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10043305 [exp]	7.5	0.8903
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Lus10015162 [exp]	9.2	0.9182
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10026418 [exp]	10.1	0.9079
					Lus10037540 [exp]	11.2	0.8830
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	12.2	0.8977

Compare expression of checked genes

Lus10014197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.