Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44110 448 / 3e-156 CYCA1;1 Cyclin A1;1 (.1) AT1G77390 385 / 6e-132 TAM, DYP, CYCA1;2 TARDY ASYNCHRONOUS MEIOSIS, CYCLIN A1;2 (.1) AT5G11300 300 / 2e-98 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) AT5G25380 297 / 2e-97 CYCA2;1 cyclin a2;1 (.1) AT1G80370 297 / 4e-97 CYCA2;4 Cyclin A2;4 (.1) AT1G15570 294 / 4e-96 CYCA2;3 CYCLIN A2;3 (.1) AT5G43080 283 / 4e-93 CYCA3;1 Cyclin A3;1 (.1) AT1G47210 280 / 8e-92 CYCA3;2 cyclin-dependent protein kinase 3;2 (.1.2) AT1G47230 277 / 2e-90 CYCA3;4 CYCLIN A3;4 (.1.2) AT1G47220 258 / 1e-83 CYCA3;3 Cyclin A3;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028544 [exp] 516 / 0 AT1G44110 476 / 4e-167 Cyclin A1;1 (.1) Lus10029700 [exp] 481 / 1e-169 AT1G44110 544 / 0.0 Cyclin A1;1 (.1) Lus10042739 [exp] 457 / 2e-158 AT1G44110 508 / 1e-177 Cyclin A1;1 (.1) Lus10008103 [exp] 310 / 1e-101 AT5G11300 465 / 6e-162 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Lus10018715 [exp] 278 / 2e-90 AT1G47230 449 / 6e-158 CYCLIN A3;4 (.1.2) Lus10024822 [exp] 277 / 6e-90 AT1G47230 452 / 5e-159 CYCLIN A3;4 (.1.2) Lus10013886 [exp] 238 / 2e-75 AT5G43080 283 / 2e-93 Cyclin A3;1 (.1) Lus10026598 [exp] 203 / 3e-63 AT5G43080 243 / 9e-80 Cyclin A3;1 (.1) Lus10012261 [exp] 190 / 2e-55 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G080000 [exp] 488 / 1e-171 AT1G44110 593 / 0.0 Cyclin A1;1 (.1) Potri.005G181400 [exp] 485 / 2e-170 AT1G44110 589 / 0.0 Cyclin A1;1 (.1) Potri.014G021100 [exp] 306 / 5e-102 AT1G47230 484 / 2e-172 CYCLIN A3;4 (.1.2) Potri.018G034100 [exp] 307 / 1e-100 AT5G11300 498 / 1e-174 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.002G121500 [exp] 300 / 2e-99 AT1G47230 472 / 1e-167 CYCLIN A3;4 (.1.2) Potri.006G247200 [exp] 301 / 3e-98 AT5G11300 494 / 3e-173 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.001G177100 [exp] 294 / 1e-95 AT1G80370 483 / 2e-168 Cyclin A2;4 (.1) Potri.003G058200 [exp] 276 / 1e-88 AT1G80370 494 / 9e-173 Cyclin A2;4 (.1) Potri.009G093100 [exp] 253 / 9e-81 AT5G43080 288 / 9e-95 Cyclin A3;1 (.1) Potri.009G165800 [exp] 184 / 4e-54 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014199 pacid=23152924 polypeptide=Lus10014199 locus=Lus10014199.g ID=Lus10014199.BGIv1.0 annot-version=v1.0 ATGCAGAGTGTTCCACCGCCGTTTTCGTCCTCTACGACGTCGTCCCAGGCCAAGCTTACTACCGCCGCTTCGTCGGAGAATGCTACTGCTTCTGCTCCGG CGACGAAGACGGCGGCGACCAATTTGGGAACTAAACGGCCTCCTCTCGGAGACATCACCAACAGCCGTAGAAACCGGTCCAAAACCGTTCTTCCTTCGTC CACTGTGGAACATAACTCAACTACATCTTCCAAGTTTGAATTCACAGGCTTAGAGAATGTGTGTAGTAGAGATGATGCACTTGGTATTGTCGAAATCGAT ATGAACGACAAGATCGTGAACCTCGACACCAATTCCGAAGACCCTCAGCTTTGTGTGACCATTGCTTGTGATATCTACAAGCATTTGAGAGCATCTGAGA CTAAGAAGAGACCAGAAACAGATTTCATGGAGAGAATCCAGAACGACATAAACCCCGATATGCGAGCTATTCTGATTGATTGGCTCGTCGAGGTTGTTGA AGAGTATAGGTTTGTTCCAGATACGTTGTACCTGACAGTGAACTACATCGATCGGTATCTTTCGGGGAATGTGATTAACAGGAAGAGATTGCAGCTACTT GGTGTTGCCTGCCTGATGATTGCTGTAAAATACGAGGAGATTTGCACGCCACGGGCTGAGGTGTTCTGTTACATTACTGATAACACATATTGCAAGGACG AGCTTCTGGAAATGGAATCAGCGGTTTTGAATTACTTGAAATTCGAGATGACAACACCAACAGCCAGATGTTTCTTAAGACGATTCGTAAGAGCTGCCCA AGGGTTCGATGATGTTCCATCGATGCAGTTGGAATGCTTAGCAAATTACATAGCTGAGATCTCTCTCCTGGAGTACAAAATGCTTTGCTACCTGCCATCA ATACTTGCAGCCTCTTCCATCTTCTTAGCCAAGTTCATCCTTTTCCCTTCGAGGACACCATGGAATTCAACTTTGCGACATTACACACTCTATCAGGCTA CTGATCTACTCAAATGTGTCAAAGATCTCCACCGCCTATGTTGCACCAGTAGTAACCCTAACGTACCGGCAATCAGAGAGAAGTACAGCACTCGTAAGTA CAATTTGGTAGCCAAGGAATTGTGCCCTCCTCAAATACCAGACCGGTATTTTGACAAGCAAAGCCCGTAG
AA sequence Show only first row Show all	>Lus10014199 pacid=23152924 polypeptide=Lus10014199 locus=Lus10014199.g ID=Lus10014199.BGIv1.0 annot-version=v1.0 MQSVPPPFSSSTTSSQAKLTTAASSENATASAPATKTAATNLGTKRPPLGDITNSRRNRSKTVLPSSTVEHNSTTSSKFEFTGLENVCSRDDALGIVEID MNDKIVNLDTNSEDPQLCVTIACDIYKHLRASETKKRPETDFMERIQNDINPDMRAILIDWLVEVVEEYRFVPDTLYLTVNYIDRYLSGNVINRKRLQLL GVACLMIAVKYEEICTPRAEVFCYITDNTYCKDELLEMESAVLNYLKFEMTTPTARCFLRRFVRAAQGFDDVPSMQLECLANYIAEISLLEYKMLCYLPS ILAASSIFLAKFILFPSRTPWNSTLRHYTLYQATDLLKCVKDLHRLCCTSSNPNVPAIREKYSTRKYNLVAKELCPPQIPDRYFDKQSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10014199 [exp]	0	1
					Lus10037800 [exp]	4.7	0.6691
					Lus10030985 [exp]	5.6	0.7078
AT2G44210			Protein of Unknown Function (D...		Lus10007458 [exp]	8.9	0.5960
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Lus10012860 [exp]	14.4	0.6254
AT3G18060			transducin family protein / WD...		Lus10042944 [exp]	22.3	0.6574
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10015271 [exp]	33.4	0.5720
AT5G55930		ATOPT1	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10004237 [exp]	35.3	0.5637
AT5G53110			RING/U-box superfamily protein...		Lus10010123 [exp]	50.8	0.5854
					Lus10021617 [exp]	58.5	0.5285
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10034085 [exp]	78.5	0.4773

Compare expression of checked genes

Lus10014199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.