Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029951 [exp] 84 / 1e-17 AT5G53840 45 / 9e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10001533 [exp] 82 / 5e-17 ND 38 / 0.009 Lus10003941 [exp] 74 / 3e-14 ND 40 / 0.001 Lus10029952 [exp] 57 / 4e-09 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10003943 [exp] 51 / 6e-07 AT3G59160 50 / 1e-06 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014200 pacid=23152871 polypeptide=Lus10014200 locus=Lus10014200.g ID=Lus10014200.BGIv1.0 annot-version=v1.0 ATGGATCCACCTCTGGCACTCCTACCCGCACGTCGAATTCAACTGCCGCGACGGCGACACAGAGGAATCGCTAGAGACAGTCGCTGCCGCCGTCAGAAAA AGTACAGCGTCCTCCCGACGGCCGAGTCCTTTAGTATTACCGGCGGCGATGTTTCTTCCTGCTGCCCTTATAATTTCCTTGACTCAATGCTCCAATTGGC TGCAAGGATTTCGCCTAGAGAGATTGACATTCAAATTAAGAACTACGACATCCCGTCGGAGTTATTCTTCGACCACGGCCGATTCCGCCGGCTCAAAGTC CTCAAGTTATCGTATTCCAACATTTACCGCTACGACGGCAGCAGCAGAAACCCTTTTGCCTGCTTGGGAAACTCCCTGAAGGTTCTCTGTCTCCACCATG TCACGTTCTTGAGTGGAGACGGTCGGATTCTGAGTAGCTTGGTCGCCGGTGCTTCTCTATTGCAGACGTCCTCGCCGGAAGAACTTCCAAGGTTTCGAAT TCAGAATCATCCGAACCTGAAAACCCTGAAGATGGAATCTGTCTGCATTGCGGATTTCGAGATCACAGGGCCTCCTGTTTGGAGACCCTGCATCTCATTG ACTTCAAATTATCGTCTATACCGATATAGGATGACAGATTACAAGATCAACAAGTTGATCACCATGTTCCCATCTTTGGAGTCCCGTACTCTGGAAAATC TGAGGGAACTACTACAACTCAAGATCGTCACTTGCCACGAGCTTCGAGAACTGAAGTTAACTTCATGGGACAGCCTCGAATCGATTGAAATCGATGCTGC TAGCTTGATCAAGTTCCATTACACTGTGTATGGCAGTCATCATCTTCCAACCATGCTTGTCAGATCATGTAGCTGTGACGCAGTAGCTGTAGTGAAGCTG AAGAAAGTCTTACCTCCCGTATACTCCGAGACATTGAAGAAGTTGCTCAACAAATTAAGCCGGTTTCGGTTGACTCTGAACCTCTCGTGCCGTTATGACC ACGTATTACGGATTAGTTTTTCGGGGGAGCAAAATGTGTCGGATATGTCTCTTATGTTTGGCTCATTTGATGCATACTAA
AA sequence Show only first row Show all	>Lus10014200 pacid=23152871 polypeptide=Lus10014200 locus=Lus10014200.g ID=Lus10014200.BGIv1.0 annot-version=v1.0 MDPPLALLPARRIQLPRRRHRGIARDSRCRRQKKYSVLPTAESFSITGGDVSSCCPYNFLDSMLQLAARISPREIDIQIKNYDIPSELFFDHGRFRRLKV LKLSYSNIYRYDGSSRNPFACLGNSLKVLCLHHVTFLSGDGRILSSLVAGASLLQTSSPEELPRFRIQNHPNLKTLKMESVCIADFEITGPPVWRPCISL TSNYRLYRYRMTDYKINKLITMFPSLESRTLENLRELLQLKIVTCHELRELKLTSWDSLESIEIDAASLIKFHYTVYGSHHLPTMLVRSCSCDAVAVVKL KKVLPPVYSETLKKLLNKLSRFRLTLNLSCRYDHVLRISFSGEQNVSDMSLMFGSFDAY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10014200 [exp]	0	1
					Lus10013570 [exp]	1.0	0.8939
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Lus10024907 [exp]	3.6	0.7894
					Lus10002152 [exp]	4.7	0.8590
					Lus10010117 [exp]	5.7	0.8590
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	6.6	0.8590
					Lus10005187 [exp]	7.4	0.8590
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	8.1	0.8590
AT2G25010			Aminotransferase-like, plant m...		Lus10008761 [exp]	8.8	0.8590
					Lus10039750 [exp]	9.4	0.8580
					Lus10012774 [exp]	10.4	0.8349

Compare expression of checked genes

Lus10014200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.