Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03905 188 / 5e-62 Iron-sulphur cluster biosynthesis family protein (.1) AT1G10500 73 / 1e-16 ATCPISCA chloroplast-localized ISCA-like protein (.1) AT2G16710 64 / 9e-14 Iron-sulphur cluster biosynthesis family protein (.1.2.3) AT2G36260 61 / 1e-12 Iron-sulphur cluster biosynthesis family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022714 [exp] 244 / 3e-84 AT5G03905 201 / 3e-67 Iron-sulphur cluster biosynthesis family protein (.1) Lus10012683 [exp] 67 / 4e-14 AT1G10500 218 / 2e-73 chloroplast-localized ISCA-like protein (.1) Lus10020827 [exp] 66 / 1e-13 AT1G10500 216 / 1e-72 chloroplast-localized ISCA-like protein (.1) Lus10017048 [exp] 56 / 4e-10 AT2G16710 220 / 5e-75 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Lus10021368 [exp] 43 / 3e-05 AT2G16710 211 / 3e-69 Iron-sulphur cluster biosynthesis family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G084300 [exp] 199 / 2e-66 AT5G03905 199 / 2e-66 Iron-sulphur cluster biosynthesis family protein (.1) Potri.005G085400 [exp] 71 / 6e-16 AT1G10500 227 / 9e-77 chloroplast-localized ISCA-like protein (.1) Potri.007G079600 [exp] 70 / 2e-15 AT1G10500 210 / 5e-70 chloroplast-localized ISCA-like protein (.1) Potri.010G238800 [exp] 67 / 2e-14 AT2G16710 211 / 2e-71 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Potri.008G020400 [exp] 64 / 1e-13 AT2G16710 197 / 5e-66 Iron-sulphur cluster biosynthesis family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01521 [flax] [poplar] Fe-S_biosyn Iron-sulphur cluster biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10014201 pacid=23152944 polypeptide=Lus10014201 locus=Lus10014201.g ID=Lus10014201.BGIv1.0 annot-version=v1.0 ATGTCGAGAATTTCGTTGATTCACGGGGTATCACGATTTGTCGCCGGTCGGATTCGGCAGAACCACAGACTTCTAAGCTCGTCGTCTTCTTCCTCCTCTG CTCTCCGTGAAGCTTCTTCTTCTGCAGCTTCTTCCTCGGATGAATCCGTTCAGCTGACCGACAATTGCATCCGGAGAATGAAAGAACTGCAAGCCGGTGA AATATCAGCGGAGGAGAAAATGCTGCGCTTGGGAGTAGAAACCGGTGGATGTTCTGGATTCCAGTATGTTTTCGACTTGGACGATAAGTTGAACCCGGAT GACAGGGTATTTGAGAAGGAAGGAGTGAAATTAGTGGTTGATAGTGTATCTTACGATTTCGTTAAAGGGGCCACCATTGATTATGTTGAGGAGCTCATTC GATCAGCATTCCAGGTGACTGAAAATCCAAGTGCGGTAGGAGGGTGCAGTTGCAAAAGTTCTTTCATGGTTAAATAG
AA sequence Show only first row Show all	>Lus10014201 pacid=23152944 polypeptide=Lus10014201 locus=Lus10014201.g ID=Lus10014201.BGIv1.0 annot-version=v1.0 MSRISLIHGVSRFVAGRIRQNHRLLSSSSSSSSALREASSSAASSSDESVQLTDNCIRRMKELQAGEISAEEKMLRLGVETGGCSGFQYVFDLDDKLNPD DRVFEKEGVKLVVDSVSYDFVKGATIDYVEELIRSAFQVTENPSAVGGCSCKSSFMVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03905			Iron-sulphur cluster biosynthe...		Lus10014201 [exp]	0	1
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Lus10020027 [exp]	4.5	0.9035
AT1G04555			unknown protein		Lus10023715 [exp]	8.8	0.8819
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10005749 [exp]	13.4	0.8323
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10038236 [exp]	16.3	0.8324
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014614 [exp]	21.4	0.8244
AT2G42780			unknown protein		Lus10031380 [exp]	23.6	0.8477
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	25.3	0.8559
AT5G50720		ATHVA22E	ARABIDOPSIS THALIANA HVA22 HOM...		Lus10032557 [exp]	25.8	0.8273
AT4G12760			unknown protein		Lus10001181 [exp]	27.3	0.8613
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Lus10014292 [exp]	28.5	0.8416

Compare expression of checked genes

Lus10014201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.