Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10130 266 / 7e-89 SOUL heme-binding family protein (.1) AT2G37970 63 / 1e-11 SOUL-1 SOUL heme-binding family protein (.1) AT5G20140 53 / 7e-08 SOUL heme-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022712 [exp] 457 / 3e-164 AT3G10130 366 / 1e-127 SOUL heme-binding family protein (.1) Lus10000227 [exp] 76 / 2e-16 AT2G37970 222 / 1e-73 SOUL heme-binding family protein (.1) Lus10017193 [exp] 74 / 1e-15 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1) Lus10027752 [exp] 57 / 1e-09 AT2G37970 275 / 2e-94 SOUL heme-binding family protein (.1) Lus10013345 [exp] 50 / 1e-06 AT5G20140 464 / 8e-164 SOUL heme-binding family protein (.1.2) Lus10001847 [exp] 42 / 0.0004 AT5G20140 330 / 3e-111 SOUL heme-binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G098500 [exp] 248 / 5e-82 AT3G10130 295 / 7e-100 SOUL heme-binding family protein (.1) Potri.016G109400 [exp] 70 / 3e-14 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1) Potri.018G073501 [exp] 53 / 6e-08 AT5G20140 528 / 0.0 SOUL heme-binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF04832 [flax] [poplar] SOUL SOUL heme-binding protein
Representative CDS sequence Show only first row Show all	>Lus10014203 pacid=23152939 polypeptide=Lus10014203 locus=Lus10014203.g ID=Lus10014203.BGIv1.0 annot-version=v1.0 ATGACCCACTACTCACCGGCGTCGAATTTTCCTGGTGTCCTCACTCCATCGCTTCGAAGCGCTGTCTCTTTGCCACTCAAAGTGACGATGCGCCTGTCCA CCGACAGAGCCACCGCATCCGCTCCGCCGCCGAAAAGAGCCGTCTCCGGTTTGGAGTCTCGAGTCTCCCTCATCTTCGCTCTTGCTGCTCAGACGAATAA CATTTCTCAGCGACTTCTGTTCGATTTGGCGAGCGAGACTGCCAAGTACGTGTTCCCGAAGAGGTTCGAGAGCCGGAATTTGGAGGAGGCATTGATGTCA GTTCCTGATCTTGAAACTGTCAAGTTCAAGGTCTTGAGCAGAAGAGACGAGTACGAGATGCGAGATGTCGAGAATACAACACAGGAGAAGATGGAAATGA CTACACCAGTTGTTACGAGTAAGACTCGGTCTGGAATTGGAGAGAAAATGGAGATGACTACTCCTGTGATAACCACAAAGGCCGAAGATGAGGAGAAGTG GAGGATGTCGTTTATCTTACCGTCCAAGTACGGATCCAACCTGCCATCACCTAAAGATCCATCAGTCCGTATCAAGGAGGTGCCGAGGAAAGTTGTAGCA GTTGTTGCTTTCTCAGGGTTTGTTAGCGATGAAGAAGTTAAACAGCAAGAAGTTAAGCTAAGAGCTGCTTTACGATATGACAAACAATACGCAGTAAAAG AAGGTGCTTCAGTTGAAGTTGCACAGTACAATCCACCTTTCACTCTCCCATTTAACCGTCGGAACGAGATTGCGATAGAGCTGGAAAGGAAGGAAGACGC AGTGGCGTAA
AA sequence Show only first row Show all	>Lus10014203 pacid=23152939 polypeptide=Lus10014203 locus=Lus10014203.g ID=Lus10014203.BGIv1.0 annot-version=v1.0 MTHYSPASNFPGVLTPSLRSAVSLPLKVTMRLSTDRATASAPPPKRAVSGLESRVSLIFALAAQTNNISQRLLFDLASETAKYVFPKRFESRNLEEALMS VPDLETVKFKVLSRRDEYEMRDVENTTQEKMEMTTPVVTSKTRSGIGEKMEMTTPVITTKAEDEEKWRMSFILPSKYGSNLPSPKDPSVRIKEVPRKVVA VVAFSGFVSDEEVKQQEVKLRAALRYDKQYAVKEGASVEVAQYNPPFTLPFNRRNEIAIELERKEDAVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10130			SOUL heme-binding family prote...		Lus10014203 [exp]	0	1
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10005435 [exp]	9.2	0.7420
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042741 [exp]	19.1	0.7037
AT1G66880			Protein kinase superfamily pro...		Lus10009149 [exp]	24.2	0.7014
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10035828 [exp]	32.7	0.6469
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10035663 [exp]	35.7	0.6757
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	36.1	0.6826
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006840 [exp]	41.2	0.6610
AT3G02645			Plant protein of unknown funct...		Lus10015084 [exp]	45.5	0.6343
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10027514 [exp]	62.6	0.6530
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10017825 [exp]	63.6	0.6414

Compare expression of checked genes

Lus10014203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.