Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05490 270 / 2e-81 SYN1 BP5, SYN1 BP2, SYN1., DIF1, ATREC8 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022711 [exp] 395 / 5e-130 AT5G05490 103 / 3e-23 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2) Lus10022665 [exp] 396 / 4e-128 AT2G30110 748 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G072300 [exp] 409 / 1e-134 AT5G05490 428 / 1e-142 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2) Potri.001G225600 [exp] 49 / 1e-05 AT3G59550 402 / 5e-130 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04825 [flax] [poplar] Rad21_Rec8_N N terminus of Rad21 / Rec8 like protein CL0157 [flax] [poplar] Kleisin PF04824 [flax] [poplar] Rad21_Rec8 Conserved region of Rad21 / Rec8 like protein
Representative CDS sequence Show only first row Show all	>Lus10014204 pacid=23152905 polypeptide=Lus10014204 locus=Lus10014204.g ID=Lus10014204.BGIv1.0 annot-version=v1.0 ATGAAGGCGAAGATCAACAGGAAGAAGCTCAACACCATCAACCTCATCCGCATCTGCGATGAGATTCTGAACCCGCCGGTTCCTATGGCGCTTCGTCTCA CCAGTATTCTCATGGGTGCTCGATCTGCTCTTACTCCGTTTTCTTGTTTGTTTCTTCTTCGTTTGTGTCATTTAGTTTGCATTGCTTTATCTTCAGGTGG AGTCGTCATCGTTTATGAACGGAAAGTGAAGATGTTGTTCGGTGAGCAAAATATTTCCCGTTCTGATAATTGCCAGTACTACTGCAACCATGGTTTTAAT TCTGCAGTATCGTTGAGCTCTTGTTGTTTTTGTTGTTCTGATTTCTTTGACGCAGATGACGTTAACCGTTTGATGGTTGAAATCAACGAGGCTTTCAAAG TGAAACCGAATGTGGACCGTACGCTTCTTCCAAGACGGAGGAAAGAAGCTGTCACTCTTCCTGAGATTCAAGAGCAGGACCTCCCTGAGGACCACGACAT TGAGCAGTCTCTCAACTTCTCGAGTTCCAACGCCACCATGAATTTCCAGCGTGCATCCTATATTGCTGTGCAACTTGACGATGTAGACGAGGCTTATTAT ACCTATAACGCTATGGAAGAAGATGGGGCTGGGAATATGCATCATCAAGCTGATCCTGAAAACATCACGCTTACCGATCACTTTGATCCATGTCAAGTTG ACACTGAAATGTATGATCGCTTTGAAAGATTTGACATTGATGGAGACGGGGATACAAATGTGAACATGACTTTTGGAGACGAAACAGATTTCCCTACAAC TCATTTCCCGTCCCCGCTGCCACCTCCACCCCCTTCACATCACGCTGAAGAAGCTACAGAAATTCCAGACCAGCATTTCGGAAACCATGTAAATCAGCAG CCCCAAGAATCAAACGGAGAAGGACAGGTTCAAGGGGTAATCAGAAGGAAAAGAAAGAGAAGAGCAGGAGCTGGAATAATAGATTATGAGACAATAGTCG TTCCTAGTGATCTGTACCAGTCATGGGTTCAAGATGCTTCTGACATCTCCTCAAGGAGAGGCAGAAAGAAGGGTCCAAGGAGTATCATGTCACAAATAAA AGTCTCCACTCTCATGGACATGCCACCTATGGTACTTATTGACAAAACCTCGATCAATGCGAACAAAGAAGTATATTACCCAGCACCACTTCTTGCACTG TGGACAAAAAGCACTCAGCCGCCACATGATTCTCCATCTGCGAGGACATTCTCACCTCCGCCTCCTGAAACCTCACCTTCACATCCACAACCAGAGACTG ACAATTTTCCAGATCATCAACATAACTTTGAAGACTTTCAGAGTAATGTTGGCTCTCGGTCGGTTGGTACTTCAGTGGAGAGGCCAGTAGCACTAGTTGG CACTGTGGATGACTTGATTGGGAAACTGGAAGCCAACCTCCCTTCCCGTGATGACTTGGAAGTCAACTTTGACAGCAACAAAATGAAAGGGAAAGAACCA GTTTTCACAACTCCTGTCGATGCTGGGAATGGAGCCAGATTCGCACCTAGTTCGAGTTCTGGACCGCCACATTACTCTGACAGGAACTCTGGACAACGGA GTGGAAGCAGTCTGCAATCAGTTCCTGAGGACATGTCATGGGCTCCAGATCCAGAACTGCAGACTGTACCCGAGAAGGACCCGACACCCGAGCAAGAGCT GATAGTGGAAACTGGACCTACACAGACTCAGCCACTAGCAATCCCGCAGCAACTTGATCCCATGACTGAAGCTATCCGGATCCATCTGAAAGCCCATTTC GAAGCACCAGGAGCTCCCCCATCAGAATCCCTCAACAATCTCGCAACTGGACTGAACCGCAGAAGAGCAGCTATGCTATTCCAGCAAGTCTGCGTTCTTG CCACACGAGGCTACATCAAAGTCGACCAGACTGAGCCCTACGGCGACATCAAGATCTCGAATGGAGCAGCAATATGA
AA sequence Show only first row Show all	>Lus10014204 pacid=23152905 polypeptide=Lus10014204 locus=Lus10014204.g ID=Lus10014204.BGIv1.0 annot-version=v1.0 MKAKINRKKLNTINLIRICDEILNPPVPMALRLTSILMGARSALTPFSCLFLLRLCHLVCIALSSGGVVIVYERKVKMLFGEQNISRSDNCQYYCNHGFN SAVSLSSCCFCCSDFFDADDVNRLMVEINEAFKVKPNVDRTLLPRRRKEAVTLPEIQEQDLPEDHDIEQSLNFSSSNATMNFQRASYIAVQLDDVDEAYY TYNAMEEDGAGNMHHQADPENITLTDHFDPCQVDTEMYDRFERFDIDGDGDTNVNMTFGDETDFPTTHFPSPLPPPPPSHHAEEATEIPDQHFGNHVNQQ PQESNGEGQVQGVIRRKRKRRAGAGIIDYETIVVPSDLYQSWVQDASDISSRRGRKKGPRSIMSQIKVSTLMDMPPMVLIDKTSINANKEVYYPAPLLAL WTKSTQPPHDSPSARTFSPPPPETSPSHPQPETDNFPDHQHNFEDFQSNVGSRSVGTSVERPVALVGTVDDLIGKLEANLPSRDDLEVNFDSNKMKGKEP VFTTPVDAGNGARFAPSSSSGPPHYSDRNSGQRSGSSLQSVPEDMSWAPDPELQTVPEKDPTPEQELIVETGPTQTQPLAIPQQLDPMTEAIRIHLKAHF EAPGAPPSESLNNLATGLNRRRAAMLFQQVCVLATRGYIKVDQTEPYGDIKISNGAAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05490		SYN1 BP5, SYN1 ...	SYNAPTIC 1, DETERMINATE, INFER...		Lus10014204 [exp]	0	1
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10002191 [exp]	2.2	0.9692
AT1G06260			Cysteine proteinases superfami...		Lus10039901 [exp]	10.7	0.9611
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10024334 [exp]	13.7	0.9205
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013823 [exp]	18.6	0.9652
					Lus10014857 [exp]	22.8	0.9652
					Lus10017783 [exp]	26.3	0.9652
					Lus10018798 [exp]	29.4	0.9652
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10016398 [exp]	30.1	0.8978
AT4G16230			GDSL-like Lipase/Acylhydrolase...		Lus10037776 [exp]	32.2	0.9652
AT3G61830	ARF	ARF18	auxin response factor 18 (.1)		Lus10041340 [exp]	33.6	0.8605

Compare expression of checked genes

Lus10014204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.