Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36220 111 / 6e-29 unknown protein AT3G52710 100 / 2e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021354 [exp] 211 / 9e-67 AT3G52710 181 / 4e-55 unknown protein Lus10022708 [exp] 203 / 2e-65 AT3G52710 100 / 7e-26 unknown protein Lus10017030 [exp] 202 / 4e-63 AT3G52710 164 / 8e-49 unknown protein Lus10022709 [exp] 162 / 1e-49 AT2G36220 77 / 1e-17 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G079500 [exp] 159 / 1e-46 AT2G36220 140 / 1e-39 unknown protein Potri.006G212800 [exp] 146 / 7e-42 AT3G52710 153 / 2e-44 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014206 pacid=23152912 polypeptide=Lus10014206 locus=Lus10014206.g ID=Lus10014206.BGIv1.0 annot-version=v1.0 ATGCCGCAGGTAGATCTGGAGAGTCTGGTAGTATCAGTCTGCTCCGGTGGCGCATGCGACAGCAAAATCGCTTGCGAAACGCTCGCCGCCGACGACGATT GCAACAACAACAACAATCAAGATCCGGAACCGGATCCGGAACTTCCGCCTGATTTTCCTCCCGAGTCGTTCTGGCTTTCCAAAGACGCGGAGCTCGATTG GCTCGATCGCAACGCCTTCATGGCGCGGCAAGATTCCACCAAGGGCAGCTCCAATTCGACGAACCTGAACCATGGTGTTTACCCGACGACGCCGGCGAAC TCGTCGCACTCGGCGAGGTACGCGAATTTGAAATCCAAGGCGTCGATGTTCGGATTGCCGAAGGCGCAGAACTCTTGCTTCGTCGATCCGAAGAACCGCC GGCATGCCAAGACTGGGACCACGCATCTGTTCCCCAAGAGATCCGCCTCCACCGCGAAATCGTCGTCCTCCGTAGCTGAGCCTGGATCGCCGAAGGTATC GTGTATGGGGAGAGTGCGATCGAAGAGAGATCGGAACCGGAGGCTACGGAGCCGGCAGCGGTCCAAGCGATCTAACGACCCGGAACTGAAGAGAGGAAAA TCCGAACGCAGACGAGAAGAATCAGGATTCATCGCAAGCTTTCGAGCGATTTTCAAGCCGTTTCTCAAATCGATGCACTCCAAGACCGGAAACTCCGCCC CACTCCACAGAGACTCGTCGTCCTCGTCGAGAACAAGCGATGCAGTTGCGACTTCAAGCGATATCAGGAATCGGCTTCCGGCTCAGAGAACCAGCGGCGG CGGAAGTGAAGTCCCTCCGTCGTTGGCGGCGGCGGGGAGTTTAGGTGGGATGGCGAAGTTTTCCTCTGGGAGGAGATCTACAGAATGGGCAAACGGGATT GTCGACGTGGCGTGA
AA sequence Show only first row Show all	>Lus10014206 pacid=23152912 polypeptide=Lus10014206 locus=Lus10014206.g ID=Lus10014206.BGIv1.0 annot-version=v1.0 MPQVDLESLVVSVCSGGACDSKIACETLAADDDCNNNNNQDPEPDPELPPDFPPESFWLSKDAELDWLDRNAFMARQDSTKGSSNSTNLNHGVYPTTPAN SSHSARYANLKSKASMFGLPKAQNSCFVDPKNRRHAKTGTTHLFPKRSASTAKSSSSVAEPGSPKVSCMGRVRSKRDRNRRLRSRQRSKRSNDPELKRGK SERRREESGFIASFRAIFKPFLKSMHSKTGNSAPLHRDSSSSSRTSDAVATSSDIRNRLPAQRTSGGGSEVPPSLAAAGSLGGMAKFSSGRRSTEWANGI VDVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52710			unknown protein		Lus10014206 [exp]	0	1
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10000595 [exp]	2.0	0.8279
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10003562 [exp]	2.4	0.8246
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10043222 [exp]	3.9	0.8467
AT5G11000			Plant protein of unknown funct...		Lus10041022 [exp]	7.1	0.8018
AT1G25400			unknown protein		Lus10041438 [exp]	8.0	0.8143
AT5G44860			unknown protein		Lus10036220 [exp]	8.0	0.8304
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10037783 [exp]	10.7	0.8294
					Lus10037253 [exp]	19.2	0.8255
AT3G02645			Plant protein of unknown funct...		Lus10022538 [exp]	21.6	0.7231
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10035010 [exp]	21.9	0.7712

Compare expression of checked genes

Lus10014206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.