Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11460 791 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 510 / 4e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 476 / 1e-160 MEF22 mitochondrial editing factor 22 (.1) AT4G30700 478 / 4e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 474 / 4e-159 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 471 / 3e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 468 / 1e-156 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 461 / 3e-152 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 457 / 3e-151 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 454 / 1e-150 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022702 [exp] 822 / 0 AT3G11460 641 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031989 [exp] 510 / 2e-173 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 486 / 1e-163 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 478 / 2e-161 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 479 / 6e-161 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 478 / 2e-160 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 478 / 2e-159 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 471 / 2e-158 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 458 / 2e-151 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G211400 [exp] 907 / 0 AT3G11460 772 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 545 / 0 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 502 / 6e-170 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 488 / 2e-165 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 485 / 4e-164 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G220300 [exp] 474 / 3e-159 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 473 / 4e-157 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G181800 [exp] 470 / 6e-157 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 465 / 2e-155 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 463 / 3e-155 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014211 pacid=23152935 polypeptide=Lus10014211 locus=Lus10014211.g ID=Lus10014211.BGIv1.0 annot-version=v1.0 ATGAAGTATTCAAAAATTTCCACAGTGGCTTACAGGGTCACAACCGCCGTCATCGACCGGAGCCATCCATCATGGAACTCCCAGCTAAGAGAACTAGCAA ACAAATCCCTATTCTCAGACTCTCTGCATCTCTACCTCCGAATGCTCCGCTCCGGAGCAACTCCAAATGCGTTTACTTTCCCGTTTGCACTCAAGTCCTC CGCCTTCCTGTCTCTACCCTTCACCGGCGAGCAGCTCCATTGCCAAGCCACCAGAACAGGATGCTTGGAAGAACCTTTCGTCCAGACCGCATTGATATCC ATGTACTCCAAATGCGGTTTCCCAGATTATGCACGTAAGGTGTTCGATGAAAATCCCCAGTCAAGAAAACTTACAGTTTGCTACAATGCTTTGATCGCCG GGTACGCCTTGAATACGAGAGTAAAGGAAACCGTGTTGCTTTTTAATGAAATGAGGGGACTTGAAGTGCCGATCAATGGAGTCACCATGCTTGGAATTGT TCCGGTTTGTGGAGTTCCAGGTAACTTGGGGCTTGGGGTATCTGTGCATTGTTGTTGTCTGAAGTTTGGATTGAATTTGGACAAGTCAGTTGGGAATGGG TTGTTGTCGATGTACTTGAGATGCGGAGAAATCGTTAGCGGACGGAAACTGTTCGATGAGATGCCTGAGCGAGGGTTGGTTACCTGGAACGCCATGATCA ATGGCTATGCTCAGAATGGACTTGCTAATCATGTATTGGAGCTCTACAGAGAGATGATCGATTCGAGCGGGATTCTTCCCGACGCTGTAACACTTGTCGG TGTTCTTTCCTCGTGTGCTCATCTCGGTGCACAAGGGATAGGTACCGAGGTCGAAAGGCGAATGCTTGATTCCGGTTTCGTTTCCAATCCATTTCTGAAC AATGCCTTGATCAATATGTATTCAAGGTGTGGAAATTTATCAAAAGCTAGACGGATTTTCGATAGCCTGCTGATAAAAAGCTTAGTTTCGTGGACAGCAA TTATAGGAGGCTACGGAATGCACGGACAGGGAGAGATTGCTGTCGAACTCTTCGATGAAATGATTCGGACCGGTACAGAACCTGACCGGACAGCTTTTGT CAATGTTCTTTCTGCTTGTAGCCATGCCGGTTTAACCGATAAGGGGCTTCGTTATTTCGATTCCATGGAGGAGAAGTACCGGTTACGTCCCGGTCCGGAG CATTACTCTTGTGTCGTGGATCTCTTAGGTCGAGCTGGCCGATTAGACGAGGGTTATAAGCTCATCAAGTCGATGAAAGTGAAACCTGATGGTGCAGTTT GGGGAGCTCTTTTAGGTGCCTGCAAAATTCACAAGAATGTAGAGCTGGCAGAGTTGGCCTTTGAAAAGGTTATAGAGATTGAACCTGCAAATATTGGATA CTACGTTTTGTTATCTAATATCTATACAGATACTGGTGATTCCGAGGGGATATCGAGGATTCGGGTGATGATGAGAGAACGGAATCTCAGAAAGGATCCA GGCTGCAGTTATGTCGAATTCGAAGGTAAAGTTCACCTCTTTCTGTCAGGAGATAAAAGTCATCCGCAGTCGAAACAGATATATAAGTTCTTGGACGAGC TCGAGAGTAAACTACAAAAGCTCGATTCTCTAACTACCAATGTGCACAGTGAGAAGTTGGCTGTTGTGTTTGGGCTATTAAACACGAAAGATGGGAAAGA GATTGTTGTGATGAAGAACCTGAGGATATGTGGAGACTGTCACTTGTTCATGAAGTTGGTTAGCAAGATTGTTGGTCGCGAATTTATAATTCGAGATCCG ACTCGATTTCATCACTTCAGAGACGGGACTTGCTCCTGCAGAGACTACTGGTGA
AA sequence Show only first row Show all	>Lus10014211 pacid=23152935 polypeptide=Lus10014211 locus=Lus10014211.g ID=Lus10014211.BGIv1.0 annot-version=v1.0 MKYSKISTVAYRVTTAVIDRSHPSWNSQLRELANKSLFSDSLHLYLRMLRSGATPNAFTFPFALKSSAFLSLPFTGEQLHCQATRTGCLEEPFVQTALIS MYSKCGFPDYARKVFDENPQSRKLTVCYNALIAGYALNTRVKETVLLFNEMRGLEVPINGVTMLGIVPVCGVPGNLGLGVSVHCCCLKFGLNLDKSVGNG LLSMYLRCGEIVSGRKLFDEMPERGLVTWNAMINGYAQNGLANHVLELYREMIDSSGILPDAVTLVGVLSSCAHLGAQGIGTEVERRMLDSGFVSNPFLN NALINMYSRCGNLSKARRIFDSLLIKSLVSWTAIIGGYGMHGQGEIAVELFDEMIRTGTEPDRTAFVNVLSACSHAGLTDKGLRYFDSMEEKYRLRPGPE HYSCVVDLLGRAGRLDEGYKLIKSMKVKPDGAVWGALLGACKIHKNVELAELAFEKVIEIEPANIGYYVLLSNIYTDTGDSEGISRIRVMMRERNLRKDP GCSYVEFEGKVHLFLSGDKSHPQSKQIYKFLDELESKLQKLDSLTTNVHSEKLAVVFGLLNTKDGKEIVVMKNLRICGDCHLFMKLVSKIVGREFIIRDP TRFHHFRDGTCSCRDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10014211 [exp]	0	1
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	5.1	0.8789
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031745 [exp]	5.8	0.8714
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10024222 [exp]	7.1	0.8434
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10033496 [exp]	12.2	0.8635
AT4G23940			FtsH extracellular protease fa...		Lus10032404 [exp]	15.2	0.8595
AT1G30680			toprim domain-containing prote...		Lus10038434 [exp]	15.7	0.8474
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041555 [exp]	25.0	0.8520
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10012897 [exp]	28.3	0.7925
AT5G26180			S-adenosyl-L-methionine-depend...		Lus10026452 [exp]	31.0	0.8376
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10026158 [exp]	31.1	0.8454

Compare expression of checked genes

Lus10014211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.