Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37570 553 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G44880 366 / 1e-120 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G29230 348 / 5e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 342 / 3e-109 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 336 / 2e-107 SLO1 SLOW GROWTH 1 (.1) AT3G12770 333 / 3e-106 MEF22 mitochondrial editing factor 22 (.1) AT1G08070 328 / 1e-103 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 324 / 7e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74630 317 / 2e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G16835 314 / 2e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022701 [exp] 1058 / 0 AT5G37570 556 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10028907 [exp] 353 / 4e-115 AT4G22760 632 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 351 / 1e-112 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 341 / 3e-109 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003422 [exp] 337 / 6e-109 AT2G44880 679 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10008825 [exp] 326 / 7e-105 AT1G06150 614 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10021068 [exp] 325 / 7e-105 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021069 [exp] 325 / 7e-105 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019797 [exp] 327 / 1e-104 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G207500 [exp] 710 / 0 AT5G37570 602 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G116100 [exp] 380 / 1e-125 AT4G22760 669 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G125500 [exp] 366 / 7e-120 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 363 / 1e-119 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 360 / 1e-116 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G046200 [exp] 349 / 2e-113 AT2G44880 676 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.009G044700 [exp] 353 / 3e-113 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 346 / 2e-111 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 342 / 2e-111 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.003G031600 [exp] 337 / 6e-107 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014212 pacid=23152947 polypeptide=Lus10014212 locus=Lus10014212.g ID=Lus10014212.BGIv1.0 annot-version=v1.0 ATGCCTTTGAGGTCCGCTTCCGGTCCTCCGTCGATCCCTCTTCTGATCAAATCCTGCAAAAGCTTAGTCCACCTTCACCAGCTCCACGCTCACATTATTC GCAGAGGCCTCGACCAAGACCACTTCATCGTCTCGCACTTGCTGACCCTGTCGACTTCGTTATCCTACTCGACCTCTGTTTTCAGCAGCTTGATTGCTCC TTCCACTTTCCTCTACAACGTCCTGTTGAAAGTCTACTCGAAGAATCGCCACTTTAAGGAGGCGTTTTTGCTCTATTTGCGGATGAAGCGGAGCGATCAT TGCGCCTCGCCGGATAAGTACACTCTCTCTTCTCTAGTTAGCTCCTGTTCTCGTGAATGTAGGTTTAGAGAAGGTAGGATTGTTCATGGATCGGCGATTA GGTATGGGGTTACGGGTGATATGTTTGTCGGTTCGGGATTGATTGACTTTTATGGGAAATGCCAGGAGATGGTTAGTGCGGAAAAGGTGTTTGATGAAAT GCCTGAGAGAAATGTTGTATGTTGGACTGCGCTGGTTGTTGGATATGCGAATATGGGGGACTTGGAAAATACCAAGAGAGTGTTTAACCAAATGCCGGTC AGGAATCAGGTTTCTTGGAATGCTATCATCACCGGGTTGGTGAAAGCCGGAGATATGGTCGGTGCGAGGAAGGTGTTTGATGAAATGCCGCAAAGGACTT GTTTTGACTACACAGTTTTGATCGACGGATACGCCAAGGATGGAGATATGGCATCGGCAATGGCATTGTTCGAATCCTCTCCGGAGAATGATATCGTTTC ATGGTCCGCATTGATATCAGGGTTCGCTCAGAATGGTTTGCCAAACCAGGCTGTGAAGATGTTTACAGAAATGGAGTCAGCGGGTATCAAACCCGACGAG TTCGTTATGGTAAGCTTGATGTCAGCTTGTTCGCAAATAGGGAGCTTGAAAATGGCAAATTGGATTAACCACTATCTGAAAGAGAGCTCGGTTGATGTTC GTCAAAATCACGTTATGTCAGCTCTCATTGGTATGAATGCTCGATGCGGGAACATGTCGAGAGCAGAAACATTGTTCGAGAAAATGCCTCAACGAAATCT GTTTGCCTATTGTTCCATGATAAAAGGGTATTCAATGTCCGGACAAGGAGATCGAGCTCTCAAGCTATTCAATAAGATGTTGGACGAGGGGTTGGTTCCG GACGAGGTGGCATTCACCGTCATTTTATCAGCGTGTAGTCGAGCTGGCCTTGTGGAAGAGGGTTGGCATTATTTTACCACTCTCAGAGACGAGTATTCCT TAGTTCCGTCTCCTGACCATTATGCGTGTATGGTGTATCTTCTTAGTATGGAAGGACGTTTAGAAGCTGCGCGCGAGCTTCTGGTGTCGTCCCCTTTTGA GCCTCATGCTTGTGCGTGGGGTGCGCTTCTCGGCGGGTGTAAGCAGTATGCTAACATCAAACTAGCTGAGGATGCCGCCGCCAAACTGTTTGATCTCGAA CCTCGAAATGCGGCTAATTACGTGTTGTTATCTGACATTTATGCAGCGTCGGATCGTTGGTTGGATGTTTCTCTTGTTAGGGAGAAGTTGAAAGAGAGAG GGCTTAGGAAATTGCCTGGTTGCAGTTGGGTATAG
AA sequence Show only first row Show all	>Lus10014212 pacid=23152947 polypeptide=Lus10014212 locus=Lus10014212.g ID=Lus10014212.BGIv1.0 annot-version=v1.0 MPLRSASGPPSIPLLIKSCKSLVHLHQLHAHIIRRGLDQDHFIVSHLLTLSTSLSYSTSVFSSLIAPSTFLYNVLLKVYSKNRHFKEAFLLYLRMKRSDH CASPDKYTLSSLVSSCSRECRFREGRIVHGSAIRYGVTGDMFVGSGLIDFYGKCQEMVSAEKVFDEMPERNVVCWTALVVGYANMGDLENTKRVFNQMPV RNQVSWNAIITGLVKAGDMVGARKVFDEMPQRTCFDYTVLIDGYAKDGDMASAMALFESSPENDIVSWSALISGFAQNGLPNQAVKMFTEMESAGIKPDE FVMVSLMSACSQIGSLKMANWINHYLKESSVDVRQNHVMSALIGMNARCGNMSRAETLFEKMPQRNLFAYCSMIKGYSMSGQGDRALKLFNKMLDEGLVP DEVAFTVILSACSRAGLVEEGWHYFTTLRDEYSLVPSPDHYACMVYLLSMEGRLEAARELLVSSPFEPHACAWGALLGGCKQYANIKLAEDAAAKLFDLE PRNAANYVLLSDIYAASDRWLDVSLVREKLKERGLRKLPGCSWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10014212 [exp]	0	1
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10000073 [exp]	3.5	0.8875
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10014113 [exp]	5.1	0.8932
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10026402 [exp]	7.4	0.8961
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10015584 [exp]	7.9	0.8882
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10015225 [exp]	9.5	0.8651
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10042768 [exp]	12.3	0.8788
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10026968 [exp]	14.2	0.8553
AT2G31340		EMB1381	embryo defective 1381 (.1)		Lus10035336 [exp]	14.5	0.8808
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10038928 [exp]	15.1	0.8719
AT4G35130			Tetratricopeptide repeat (TPR)...		Lus10003233 [exp]	16.1	0.8347

Compare expression of checked genes

Lus10014212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.