Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22400 460 / 2e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT3G11490 449 / 2e-155 rac GTPase activating protein (.1) AT2G46710 383 / 2e-129 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT1G08340 375 / 6e-128 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT4G03100 375 / 8e-127 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT5G61530 49 / 4e-06 small G protein family protein / RhoGAP family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022700 [exp] 823 / 0 AT5G22400 459 / 6e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10030213 [exp] 401 / 8e-136 AT2G46710 440 / 1e-151 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10005998 [exp] 397 / 1e-134 AT2G46710 460 / 8e-160 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10009778 [exp] 368 / 1e-123 AT4G03100 456 / 7e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10024768 [exp] 367 / 1e-123 AT4G03100 475 / 6e-167 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10020625 [exp] 347 / 4e-116 AT5G22400 362 / 4e-122 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10004864 [exp] 280 / 2e-89 AT5G22400 326 / 6e-108 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G078200 [exp] 577 / 0 AT5G22400 482 / 7e-168 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.006G211200 [exp] 563 / 0 AT5G22400 461 / 2e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.009G162900 [exp] 459 / 1e-158 AT5G22400 457 / 3e-158 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.004G201600 [exp] 451 / 6e-156 AT5G22400 429 / 3e-147 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.014G135570 [exp] 399 / 2e-135 AT4G03100 500 / 6e-176 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.002G176800 [exp] 384 / 2e-129 AT2G46710 477 / 3e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.014G103600 [exp] 370 / 4e-124 AT2G46710 478 / 2e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0409 [flax] [poplar] GAP PF00620 [flax] [poplar] RhoGAP RhoGAP domain CL0409 [flax] [poplar] PF00786 [flax] [poplar] PBD P21-Rho-binding domain
Representative CDS sequence Show only first row Show all	>Lus10014213 pacid=23152888 polypeptide=Lus10014213 locus=Lus10014213.g ID=Lus10014213.BGIv1.0 annot-version=v1.0 ATGACCGAGGTGCTTCAATCCCCCCCTCCATCTCACTTCCCTCCTTCCCCTCCAAGCTCTTCTTCTACTGCCCCCTCGCCATGTGTTCCAACTGATAATA ATAACAATCCACTTCGATTTAGCCCAACCAGACCCCATCAAACAGACCTAGAAGAAGAAGAAGAAGATCAAGAGCTAGGGAGGAAAGATAGGGAGGGAGA AGGAGATCAGATCTCGATTCTTGAGCTTTTGGTGACTGTTTTCAGGAGGTCCATTGTTGGCTGTAGTGTTACAGCTGCTGGGAATAACAAGGAGCTTTGT AGGATGGAGATTGGTGTTCCTACCAATGTCAGGCATGTTGCTCATGTCACTTTTGACAGGTTCAATGGCTTTCTTGGCTTGCCTGTTGAGTTTGAGCCTG AGGTTCCCAGGAGAGCACCTAGTGCCAGTGCCACTGTTTTCGGAGTTTCAACAGAGTCGATGCAGCTCTCATATGATTCTAGAGGAAATAGTGTGCCTAC CATCCTCTTGATGATGCAGATGCACTTGTATACCCGTGGAGGTTTGGAGGCAGAAGGAATCTTCAGGATAAATGGAGAGAACAGCCAAGAAGAGTACGTC AGGGACCATTTAAATAGGGGAGTGGTCCCTGAGGGCGTTGATATCCACTGCCTGGCAGGTCTTATCAAGGCTTGGTTCAGGGAACTCCCGACCGGTGTCT TGGATTCTCTTTCACCGGAGCAAGTGATGCAGTCTCGGTCAGAGGAAGAGTGTGCTCAGCTTGCAAGGCTCCTACCTCCAACCGAAGCTGCTCTGCTGGA CTGGGCAGTTAATTTAATGGCCGACGTTGCACAACTGGAGCATCTGAACAAGATGAATGCTCGCAATATCGCCATGGTTTTTGCACCAAACATGACTCAT ATGTCAGATCCGCTCACTGCATTGATGTACGCGGTCCAAGTGATGAACTTTCTCAAGACCCTAATCATCAGAACCCTTAAAGAAAGAGAAGAATCAATGG TAGAAGATGCCAACACTTCCCAACCCGAGTCTTCCGACGAGAATGGTCACTGGAGCTGCTCTAAACCGTCATTCCAGGAGTCTGACGAGGATGATACCAA CAAGGTGAATGAAGATCAGAAAGAATTCGTTTCAGGGGAGCCTGTAGTCGAAAGTTCATCTGAATATGATGATGATGATGATTCCCAAAATCCTGAAACT TTCTTAACGTCTGTCGAAAATGTCCTTGGAGGAAGCCGGTCCCTCGCTGATACTTGTCATTGCGACGTGCTATCTGAAGTGAAAAACTTGACAATCGAGC ACCAAGTAGGCGGGTTCAAGAGCCGAAGTGGCAGGATTCAACCTATGAATCAAAAGATCAAAACTCACGCAGCAGCAGCATACGGTCTCCAGAAGAGTAT CGTAGGCCGGATAAATCAACGGACCGAACTGGTTGAAGCTTGGAGATGA
AA sequence Show only first row Show all	>Lus10014213 pacid=23152888 polypeptide=Lus10014213 locus=Lus10014213.g ID=Lus10014213.BGIv1.0 annot-version=v1.0 MTEVLQSPPPSHFPPSPPSSSSTAPSPCVPTDNNNNPLRFSPTRPHQTDLEEEEEDQELGRKDREGEGDQISILELLVTVFRRSIVGCSVTAAGNNKELC RMEIGVPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSYDSRGNSVPTILLMMQMHLYTRGGLEAEGIFRINGENSQEEYV RDHLNRGVVPEGVDIHCLAGLIKAWFRELPTGVLDSLSPEQVMQSRSEEECAQLARLLPPTEAALLDWAVNLMADVAQLEHLNKMNARNIAMVFAPNMTH MSDPLTALMYAVQVMNFLKTLIIRTLKEREESMVEDANTSQPESSDENGHWSCSKPSFQESDEDDTNKVNEDQKEFVSGEPVVESSSEYDDDDDSQNPET FLTSVENVLGGSRSLADTCHCDVLSEVKNLTIEHQVGGFKSRSGRIQPMNQKIKTHAAAAYGLQKSIVGRINQRTELVEAWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22400			Rho GTPase activating protein ...		Lus10014213 [exp]	0	1
AT5G22400			Rho GTPase activating protein ...		Lus10022700 [exp]	1.0	0.9897
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10038930 [exp]	1.4	0.9793
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011616 [exp]	2.8	0.9713
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10014238 [exp]	3.5	0.9728
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10024272 [exp]	6.5	0.9672
AT1G11410			S-locus lectin protein kinase ...		Lus10042939 [exp]	8.1	0.9474
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10027059 [exp]	9.0	0.9621
AT5G55950			Nucleotide/sugar transporter f...		Lus10022563 [exp]	10.0	0.9606
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10017863 [exp]	11.6	0.9685
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10030396 [exp]	13.0	0.9634

Compare expression of checked genes

Lus10014213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.