Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52610 482 / 4e-168 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022699 [exp] 678 / 0 AT3G52610 362 / 5e-123 unknown protein Lus10022698 [exp] 422 / 1e-144 AT3G52610 380 / 3e-128 unknown protein Lus10014215 [exp] 419 / 4e-143 AT3G52610 372 / 3e-125 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G210900 [exp] 574 / 0 AT3G52610 504 / 1e-176 unknown protein Potri.016G078000 [exp] 484 / 9e-169 AT3G52610 423 / 7e-145 unknown protein Potri.006G210800 [exp] 209 / 1e-65 AT3G52610 206 / 2e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014214 pacid=23152928 polypeptide=Lus10014214 locus=Lus10014214.g ID=Lus10014214.BGIv1.0 annot-version=v1.0 ATGTCGAACCAATCAGACCCGCCGGAGTACACCACCCGACCCGTCGGCGGGACTGAATACAGCTGGTGCAAAGCAGTCCCAGGCGGAACCGGCATCACAG TCCTCGCTCTCCTCCTCTCCAAATCCCCCAACATCCCAGTTCTCCAAAATGCCCTCCGAACACTCCAGATTTCCCACCCTATCCTCCGCTCCAAGCTCCG CTTCACCGCCGCGGCGAACAATTTCTCTTTCGTCACTCCGCCGCCGTTGACGACTACTGCCGACGACATCCAAATCCGTCACTTCGATCTCTCCTCCACC GCCGACATTATCAAATCCGGCGAGACCGAGGAGATCGAGAAGTTCGGAATCACTACGCACCAGCTGGTACTCGAGCACGAGATGAACGAGAATCCGTGGA CCGATCACGAAAACGGCACGGACAAGGAGCTGTTCTTCGTGAGCTTGTACTCGCTGAGCGACGCGCGGTGGCTGCTGGCGATCCGGCTCCATACGGGGGC GTGCGACCGGTCGTCGGCGGTGGCGCTGCTGGCGGAGCTAATGGAGTTGATCGGCGGTGGTGGAGTCTGCGGAGAGAAGGAAGAGATTCAGCAGAGCGAG ATCGGATTGGGGATCGAGGAGTACATTCCTCGAGGGAAGGCGAACAAGCCGTTCTGGGCGCGTGGGAAGGACATGCTTGGATACTCGCTGAATGCGCTCA GGACGTCGAATTTGGAGTTCGTCGACCCCGCTGGCGAGCCTCGCTGCTCGCGGATGGTCCGCCTGGTGATGACCTCCGACGACACCGCTAAGCTCGTTGC TGGATGCAAGTCAAGGAACATAAAGCTCTGTGCTGCATTAGCAGCTGCAGCCATGATTGCAGCAAGATCATCCAAAGACCTTCCTGATAATCTCCAATAC GAGAAGTATTCGATTGCGACGCTCCTTGATTGTCGATCAATTCTCGACCCTGTCCTCAGTATCCACCACCTTGGGTTCTACCACTCAGCCATAACGAATT CACACGACGTGAACATGGAAGACGAGCTGTGGGAGCTAGCCGAGAGGTGCTACGCTTCCTTTGCCAATGCCAAGAACAACAACAAGCACTTCAGCGACAT GTCCGACCTCAACTTCCTCATGGTTAAGGCCGTCGAGAATCCCGGTCTGACCCCGTCGTCTGCCCAGAGGACCGCACTGGTGTCAGTTTTCGAGGAAGCA ATGATTGACGACTCCTCAAAAGACATGCATTCGCAGATTGGCGTGGAGGATTTTATAGGGTGTGCTTCGGTCCATAACGTGGGGCCTTCGCTAGCGATAT TCGACACGATTAGGGACGGGAAGCTGGATTGCGCTTGCGTGTACCCCTCGCCGTTGCATTCCAGGGAGCAGATGGAGAGGTTTGTTGATGATATGAATCG CATTCTTGTTGATGGTTTGTGTGAGAGTTGA
AA sequence Show only first row Show all	>Lus10014214 pacid=23152928 polypeptide=Lus10014214 locus=Lus10014214.g ID=Lus10014214.BGIv1.0 annot-version=v1.0 MSNQSDPPEYTTRPVGGTEYSWCKAVPGGTGITVLALLLSKSPNIPVLQNALRTLQISHPILRSKLRFTAAANNFSFVTPPPLTTTADDIQIRHFDLSST ADIIKSGETEEIEKFGITTHQLVLEHEMNENPWTDHENGTDKELFFVSLYSLSDARWLLAIRLHTGACDRSSAVALLAELMELIGGGGVCGEKEEIQQSE IGLGIEEYIPRGKANKPFWARGKDMLGYSLNALRTSNLEFVDPAGEPRCSRMVRLVMTSDDTAKLVAGCKSRNIKLCAALAAAAMIAARSSKDLPDNLQY EKYSIATLLDCRSILDPVLSIHHLGFYHSAITNSHDVNMEDELWELAERCYASFANAKNNNKHFSDMSDLNFLMVKAVENPGLTPSSAQRTALVSVFEEA MIDDSSKDMHSQIGVEDFIGCASVHNVGPSLAIFDTIRDGKLDCACVYPSPLHSREQMERFVDDMNRILVDGLCES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52610			unknown protein		Lus10014214 [exp]	0	1
AT5G65250			unknown protein		Lus10000635 [exp]	6.3	0.8002
AT5G52540			Protein of unknown function (D...		Lus10027508 [exp]	11.7	0.7875
AT4G38660			Pathogenesis-related thaumatin...		Lus10025055 [exp]	15.7	0.7752
AT2G18910			hydroxyproline-rich glycoprote...		Lus10025469 [exp]	17.3	0.7473
AT5G65250			unknown protein		Lus10023151 [exp]	18.7	0.7583
AT1G75760			ER lumen protein retaining rec...		Lus10017213 [exp]	19.0	0.7705
AT2G45590			Protein kinase superfamily pro...		Lus10041395 [exp]	21.0	0.7705
AT3G63170			Chalcone-flavanone isomerase f...		Lus10022046 [exp]	27.7	0.7494
AT1G53280		AtDJ1B	DJ-1 homolog B, Class I glutam...		Lus10009525 [exp]	30.6	0.7634
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10028813 [exp]	34.3	0.6876

Compare expression of checked genes

Lus10014214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.