Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52610 365 / 3e-122 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022698 [exp] 853 / 0 AT3G52610 380 / 3e-128 unknown protein Lus10014214 [exp] 404 / 2e-137 AT3G52610 484 / 5e-169 unknown protein Lus10022699 [exp] 334 / 6e-112 AT3G52610 362 / 5e-123 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G078000 [exp] 532 / 0 AT3G52610 423 / 7e-145 unknown protein Potri.006G210900 [exp] 414 / 2e-141 AT3G52610 504 / 1e-176 unknown protein Potri.006G210800 [exp] 207 / 8e-65 AT3G52610 206 / 2e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014215 pacid=23152926 polypeptide=Lus10014215 locus=Lus10014215.g ID=Lus10014215.BGIv1.0 annot-version=v1.0 ATGGAACCAGTAAAAGGAAGCAGAGTGCTCGGCGGCACAGAACAGAGCTGGTCCAGAGCAGTCCCCGGCGGAACAGGGACGGCCGTCTTAGCAATTCTAA CCACCAAATCTCCAAACTCCGCCGCTCTCCAGACCGCCCTCCACACCCTCCAAACCAACCACCCCATTCTCCGGTCCAGACTCAACAATTCCTCATCTCC GGCAACAATCATCACCGCCGACAAGCCTTTCGTCGCCGTCACAGAGTACAACCTCTTGCACACCCTCAACATCCTCGAAAACAATAACAACAACAAATTC AATCCCTCCCCTTTGCAGTTGATCCTCGAACACGAGCTTAACAACAACAAGTTCAATTCTTCTCTCAACGATGATCTCGAGGACATGTTGTTTGCAACGA CGTATGCTCTGCCTCAGGAGAAATGGGCGATGGTGCTCCGGCTCCACGTGGCGGCATGCGATAGGACGACGGCTGTTTCCTTGCTCAAGGAACTGCTTAT GTTGGTGGGTCCGAAGGATCAAGAGGAGACCATGTCGTCGTGGGTGGAGGTGTGTCGGGGAGCTGGGTTGGAAATTGAGAAGCTGATTCCGGGCGGGAAG AACAAGAAATCGATGTGGGCGAGGGGGGTTAACATGGTTGGTTACTCGCTCGGTTCGTCCCGGTTAACCAACTTGAAGTTTGTCGATGCCAAGTCGCCTA GGCGGTCTCGGGTCGTTAGGCTCCAGCTCGATCATGATCAGACCCGAAAACTTCTCGATGGTTGTGAGAAGGCGGGAATCAAGCTCTGCGGGGCATTGAC GGCGGCCGGAATGATAGCGGTAGCACACAGCATGAGAAAGAACGTTAACTATAACGGCGGAGCCGATAATAAACAAAGAAAATTCGGAGTCGTAACGTTG ACAGATTGTAGACCCATCCTGAAGCCGTCTCTTTCACCACACCATTTTGGATTTTACCATTCTGCCATCATGAACACCCACGTCCTCAAAACGACGCCGC ACAAGTTATTTGAAGTGGCGCAAAAAGCTTACGCTGCATTCAAATCCTACAAGGACAGTCACAGGCAGTTCACGGACATGGCGGACATCAACTTCCTGAT GACGACGGCCCTTGATAACCCGTCTCTGACTCCTTCTTCCGCCCTACGGACCTCACTGATGTCGGTTTTCGAGGACACCGTCGTAGACAACTCGTCCAAC TCGGGATCGGACAGGGACGAGGTTGGGGTGGTGGACTACATGGGGTGCGCCTCGGTGCATGGGATCGGACCCTCGATCGCGGTGTTCGACACGGTGAGGG AAGGGAAACTGGACTGCGTGTGTGTCTACCCGTCGCCGTTGCATTCGAGGGAGCAGATGGAGGAGTTCGTGGAGAAGATGAAGAGTGTTCTGATTAGTGG GTGA
AA sequence Show only first row Show all	>Lus10014215 pacid=23152926 polypeptide=Lus10014215 locus=Lus10014215.g ID=Lus10014215.BGIv1.0 annot-version=v1.0 MEPVKGSRVLGGTEQSWSRAVPGGTGTAVLAILTTKSPNSAALQTALHTLQTNHPILRSRLNNSSSPATIITADKPFVAVTEYNLLHTLNILENNNNNKF NPSPLQLILEHELNNNKFNSSLNDDLEDMLFATTYALPQEKWAMVLRLHVAACDRTTAVSLLKELLMLVGPKDQEETMSSWVEVCRGAGLEIEKLIPGGK NKKSMWARGVNMVGYSLGSSRLTNLKFVDAKSPRRSRVVRLQLDHDQTRKLLDGCEKAGIKLCGALTAAGMIAVAHSMRKNVNYNGGADNKQRKFGVVTL TDCRPILKPSLSPHHFGFYHSAIMNTHVLKTTPHKLFEVAQKAYAAFKSYKDSHRQFTDMADINFLMTTALDNPSLTPSSALRTSLMSVFEDTVVDNSSN SGSDRDEVGVVDYMGCASVHGIGPSIAVFDTVREGKLDCVCVYPSPLHSREQMEEFVEKMKSVLISG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52610			unknown protein		Lus10014215 [exp]	0	1
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023294 [exp]	1.0	0.9990
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007351 [exp]	3.2	0.9897
AT5G61120			unknown protein		Lus10035396 [exp]	3.5	0.9713
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	4.6	0.9894
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10041924 [exp]	5.0	0.9818
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	5.3	0.9844
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Lus10000747 [exp]	7.3	0.9773
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10026680 [exp]	7.5	0.9801
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10009567 [exp]	8.7	0.9609
AT5G36000			unknown protein		Lus10004013 [exp]	8.9	0.9771

Compare expression of checked genes

Lus10014215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.