Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36200 1404 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 833 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 821 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G37420 725 / 0 ATP binding microtubule motor family protein (.1) AT5G47820 239 / 3e-65 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G12020 238 / 3e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60930 240 / 5e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G17360 239 / 2e-64 POK1 phragmoplast orienting kinesin 1 (.1) AT1G59540 232 / 9e-64 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G44050 229 / 2e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021340 [exp] 1692 / 0 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10017016 [exp] 1583 / 0 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018120 [exp] 807 / 0 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 802 / 0 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024429 [exp] 682 / 0 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025304 [exp] 677 / 0 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10009073 [exp] 660 / 0 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10022694 [exp] 658 / 0 AT2G36200 394 / 3e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025275 [exp] 622 / 0 AT3G45850 981 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G077800 [exp] 1513 / 0 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 1506 / 0 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 815 / 0 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 787 / 0 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 697 / 0 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.016G082400 [exp] 676 / 0 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G150800 [exp] 253 / 4e-69 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G106000 [exp] 240 / 5e-65 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G123500 [exp] 235 / 5e-64 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G024700 [exp] 233 / 5e-63 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10014216 pacid=23152907 polypeptide=Lus10014216 locus=Lus10014216.g ID=Lus10014216.BGIv1.0 annot-version=v1.0 ATGATGTGCGCCCGGCCGGCGAACGGGGTTAACGCCAAGGCACTGGTCCAGGTCCTGCTTCGTTGCAGGCCGTTTAGCGACGATGAGTTGAGGTCCAATG CGCCACAGGTGGTGACTTGTAATGATTACCAGAGAGAAGTGGCAGTTTCTCAGAATATCGCTGGGAAGCAAATCGACAGAGTTTTCACATTTGACAAGGT TTTTGGTCCGTCAGCTCAGCAACGAGACCTTTATGAACAAGCAGTGGTACCAATTGTACACGAGGTTTTGGAAGGGTTTAATTGTACAATTTTTGCATAT GGTCAAACGGGTACTGGTAAAACTTATACAATGGAAGGAGAATGCAGGAGGGCAAAGAGTGGGATTAATGGGGAACTGCCTCAAGAAGCAGGGGTTATTC CTAGAGCTGTGAAACAAATTTTTGACACACTTGAAGGCCAGAATGCTGAATACAGTGTGAAAGTGACTTTCTTGGAGCTCTACAATGAGGAAATCACTGA TTTGCTGGCCCCAGAAGAACTCTCTAAGGTAACTTTGGAGGAGAAGCAGAAGAAGCAGCTGCCACTTATGGAGGACGGGAAAGGTGGAGTTCTTGTGAGG GGTCTGGAGGAAGAGATAGTGACGAGTGCCAGTGAAATATTCACTCTTCTTGAAAGGGGTTCCTCAAAAAGGCGAACTGCTGAAACTTTGTTAAATAAGC AATCCAGTCGTTCGCACTCGCTCTTTACCATTACAATCCACATCAAAGAATCAACTCCAGAAGGCGAGGAACTAATCAAATGTGGAAAATTGAATTTGGT GGATCTGGCTGGCTCAGAAAACATTTCTCGTTCTGGTGCAAGGGAGGGCCGTGCTAGAGAAGCTGGTGAAATCAACAAAAGTTTGCTTACCTTGGGCCGA GTAATTACTGCTCTTGTGGAGCATCTTGGTCATGTTCCATATAGGGACAGCAAGCTCACTCGATTGCTCCGAGATTCTCTGGGTGGAAGAACCAAAACTT GCATCATAGCCACTGTTTCACCTGCTGTTCATTGTTTGGAGGAGACCCTGAGCACGTTAGATTATGCACATCGGGCCAAGCATATAAGGAATAAGCCAGA GGTGAATCAAAAAATGATGAAAACAACACTTATCAAAGATCTATACGGTGAAATCGAAAGATTGAAGGGAGAGGTTTATGCTGCTAGGGAAAAAAATGGT GTCTACATCCCCAAGGAACGATATTATCAGGAGGAATCTGAAAGAAAGGCTATGGCTGACCAAATAGAGCAAATGGGAGTAAAGATAGAAACTCATCAGA AGCAACTTGAAGAGTTGCAAGAGAAATATGATATTCAAGTTCGGCATTGTTCTGACTTAAGCAGCAAACTTTCTGCCGCAGAGAGAAATTTGCTTGAAAC AAGTAAATTACTTTCCGATACCGAGGAAGAATTGAAAAAGTGCCGTTATGCATTGAATGAAAAGGATTTTGTCATATCTGAGCAAAATAAAGCTGAGAAT GCCTTGACTCAACAAGCACGTACTTTGCGGTCAGACTTGGAGAAAGCTCTGAAAGACAACGCTTCTTTGTTTGAAAAGATTGGGAGAGAAGACAATCTGC AATCCGAAAACAGATCATTAGTAAATAGTTTCCAGGCGGAGCTCGCCCAACAGATTGGTTCTCTTCGTAGCATCGTCGCAAATTCTATGTCTCAGCAGGA TGAACATCTCCAGTGTGTTAGTAAACTGTGTCACTCCTTTCTGGCGACACATGACAAGGCGGTCAACGACATGAAGAAAAAGTTGACCAACACAAGGGCA TTGTACACTTCACACATTGAAGCTTTCCAGAACGTGGTTAGTCTGCACAAAGCAAGTTCTATTGCTGGCCTGGAAGATATCTCAACTCTGGGTGCTTCAG CTTCACCGTCGTTGGCTGCTTCAGATGCACAGTCGATTGAAGATTATCTAGCTTCAGAGGGTGTTCAAGTAGCTTCGATTTTCGATGATTTGCGGGGTGC TCTCTCCACTCATCAAGGGGAAATGGCTGTTTTCGCGAAGGAGCTACATCAGAGATTCAGTTCAAGTGGTGAGCAGACAAAGCAGATTTCAGACTATACA GATGAATTCTTTGGCAAATTGATGGACCAGTCCAAAACTATCCAAAATCATGTGACACGAGTTGACGACACACAAATGAACAACATTGCTGATTTTCAAA AAGCATACGAGGAACAAACCAAAGCCGATGCGGAAAAACTTGTTGCCAATATCAGCAATCTTGTTTCTCATCACATTCTCCGTCAGAAAGAGCTGGTGAA TGCAAGGCTTGATGGTTTCAGGGAGGCTGCAACAGAAAGCAGAGAGTTTTTGGATGGTCAAGTTTCTTCTTTGGAGAATGTTACCACTGAAGCAAAACGA AAATGGCAGGAATTTTGCGCGCAAGCGGGGAGTGAAGCCAAGGATGGCGCGGACTATTCTACTGCGAAACATTGTCGTATGGAGATGCTCCTGCAGCAAA GTGTAAGCAATGCGGAATCAGCTTTCAAGCACTATAAAAAGACTAACGACTCGGTTAACGAAATGTGCACCAAACATGTCAAATCTGTGGCTTTGCTTGT CAGAGATTCATCTGACAGCATCGAGCAACACGTTGCTGAGATCGATTCTGCGAAAACTGCAGCCGAGCAAGATGTCGCGACGAACAACGAAGATGCGCTT CGACATGTTGATGATATGTCAGCAAAAGAACGTGATTCGGTGTCAGGCATAATGACAGCCGTGGAAGCGCATACGAAGACCCTTGAGCTTTTCCGGGAGG ATCACAGTGAGCAAGCCACAGTCATGGAGAACAAAACACAGGAAACTTTCCAGGAGCGCTTTATGGATTATGAGCCAACTAGTACGACTCCAACGAGGAC CGAGCCTGACATTCCGAGCAATGGGACAATCGAATCCCTGAGAGCAATGCCAATGGAAGCTCTGTTGGAGGAATTTCGAGAGAACAACTCGTACGAATCG TTTGAGGTGAAGGAAACCAAACCATCTCTAATCCCACGGCCGCCCCTTACCCAAATCAATTAG
AA sequence Show only first row Show all	>Lus10014216 pacid=23152907 polypeptide=Lus10014216 locus=Lus10014216.g ID=Lus10014216.BGIv1.0 annot-version=v1.0 MMCARPANGVNAKALVQVLLRCRPFSDDELRSNAPQVVTCNDYQREVAVSQNIAGKQIDRVFTFDKVFGPSAQQRDLYEQAVVPIVHEVLEGFNCTIFAY GQTGTGKTYTMEGECRRAKSGINGELPQEAGVIPRAVKQIFDTLEGQNAEYSVKVTFLELYNEEITDLLAPEELSKVTLEEKQKKQLPLMEDGKGGVLVR GLEEEIVTSASEIFTLLERGSSKRRTAETLLNKQSSRSHSLFTITIHIKESTPEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGR VITALVEHLGHVPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKHIRNKPEVNQKMMKTTLIKDLYGEIERLKGEVYAAREKNG VYIPKERYYQEESERKAMADQIEQMGVKIETHQKQLEELQEKYDIQVRHCSDLSSKLSAAERNLLETSKLLSDTEEELKKCRYALNEKDFVISEQNKAEN ALTQQARTLRSDLEKALKDNASLFEKIGREDNLQSENRSLVNSFQAELAQQIGSLRSIVANSMSQQDEHLQCVSKLCHSFLATHDKAVNDMKKKLTNTRA LYTSHIEAFQNVVSLHKASSIAGLEDISTLGASASPSLAASDAQSIEDYLASEGVQVASIFDDLRGALSTHQGEMAVFAKELHQRFSSSGEQTKQISDYT DEFFGKLMDQSKTIQNHVTRVDDTQMNNIADFQKAYEEQTKADAEKLVANISNLVSHHILRQKELVNARLDGFREAATESREFLDGQVSSLENVTTEAKR KWQEFCAQAGSEAKDGADYSTAKHCRMEMLLQQSVSNAESAFKHYKKTNDSVNEMCTKHVKSVALLVRDSSDSIEQHVAEIDSAKTAAEQDVATNNEDAL RHVDDMSAKERDSVSGIMTAVEAHTKTLELFREDHSEQATVMENKTQETFQERFMDYEPTSTTPTRTEPDIPSNGTIESLRAMPMEALLEEFRENNSYES FEVKETKPSLIPRPPLTQIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36200			P-loop containing nucleoside t...		Lus10014216 [exp]	0	1
AT1G72250			Di-glucose binding protein wit...		Lus10005582 [exp]	1.4	0.9843
AT1G72250			Di-glucose binding protein wit...		Lus10013714 [exp]	2.0	0.9812
AT3G44050			P-loop containing nucleoside t...		Lus10008438 [exp]	3.0	0.9739
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10018715 [exp]	4.2	0.9670
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10009366 [exp]	4.2	0.9643
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10025718 [exp]	4.5	0.9642
AT1G49870			unknown protein		Lus10002116 [exp]	5.9	0.9663
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10012799 [exp]	5.9	0.9709
AT5G60930			P-loop containing nucleoside t...		Lus10000762 [exp]	6.3	0.9710
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10034060 [exp]	6.3	0.9650

Compare expression of checked genes

Lus10014216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.