Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36190 712 / 0 ATCWINV4 cell wall invertase 4 (.1) AT3G52600 705 / 0 ATCWINV2 cell wall invertase 2 (.1.2) AT3G13790 602 / 0 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT1G55120 576 / 0 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT3G13784 543 / 0 ATCWINV5 cell wall invertase 5 (.1) AT5G11920 480 / 2e-164 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT1G12240 478 / 7e-162 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) AT1G62660 474 / 8e-161 Glycosyl hydrolases family 32 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014217 [exp] 1077 / 0 AT2G36190 688 / 0.0 cell wall invertase 4 (.1) Lus10017015 [exp] 893 / 0 AT2G36190 683 / 0.0 cell wall invertase 4 (.1) Lus10021339 [exp] 877 / 0 AT2G36190 691 / 0.0 cell wall invertase 4 (.1) Lus10008392 [exp] 588 / 0 AT3G13790 756 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015614 [exp] 563 / 0 AT3G13790 658 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037633 [exp] 556 / 0 AT3G13790 704 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037632 [exp] 551 / 0 AT3G13790 648 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10001529 [exp] 543 / 0 AT3G13790 598 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037631 [exp] 522 / 3e-180 AT3G13790 633 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G077400 [exp] 814 / 0 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.006G210600 [exp] 804 / 0 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077500 [exp] 787 / 0 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2) Potri.006G227400 [exp] 573 / 0 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G227500 [exp] 558 / 0 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.003G112600 [exp] 481 / 4e-163 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 464 / 1e-156 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.015G127100 [exp] 438 / 8e-147 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08244 [flax] [poplar] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal CL0143 [flax] [poplar] B_Fructosidase PF00251 [flax] [poplar] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014219 pacid=23152948 polypeptide=Lus10014219 locus=Lus10014219.g ID=Lus10014219.BGIv1.0 annot-version=v1.0 ATGGGAGTGAAAACAACAATCCCTTCAATGCTGAAGGCCATCGCCTTTTGTTTCGTTGCAGTAACCATAATCGGAGTCGAAGGTTCTCATAAAATATACA GGGAGTTGCAGTCTGTCCCTGCTAAAAAGGTCGAGCAAGTTCACCGAACTGGGTATCATTTTCAGCCTCCTAAGCACTGGATCAACGATCCAAATGGCCC AATGTTCTTCAATGGCTTCTACCATTTGTTTTACCAATACAACCCTAAAGGAGCAGTGTGGGGAAACATAGTTTGGGCCCATTCGGTTTCGAAGGACCTC ATAAACTGGGAGGCCCTCGAGCCCGCAATCGAAGCCACAAAGCCATTTGATGCCAAAGGCTGTTGGTCCGGATCCGCCACAATCTTACCGGGAAACAAGC CCGTTCTCTTCTACACGGGAATCGACAAGAAAAAACGCCAGCTCCAAAACTACGCCATTCCCAAGAACGAATCAGATCCGTACCTCCGCGAGTGGGTCAA GCCGGATAAGGGAAACCCGTTCGTTGAACCGGACCCTTCCGTCAACGCCAGCGCCTTCCGTGACCCGACCACTGCCTGGTTCAACAAAGGCATGTGGAAC ACGATCATCGGCAGCAAGCATGACTTGCTTGGGATCGCGTACTTGTACAAGAGTAAAGATTTTAAGAAATGGACAAAGGCAGAGAAACCTCTCCACCAGA AAGAGGGGACGGGTATGTGGGAGTGTCCGGATTTCTACCCGGTGTCCACCACAGGAGAGAAAGGGCTGGACACTTCGGTTGTTGGGAAGGACGTGAAGCA CGTTTTTAAAGTGAGTTTGGACTTGACGAGGTTTGAGTATTACACTATAGGAACTTACGACGTGAAGAACGATAAGTATATTCCGGACGAAGGCTCGATC GACAGCTGGGCCGGAATCAGATATGACTATGGAAACTTCTATGCTTCAAAGTCGTTCTTCGATTCAAAGAAGCAACGTAGGGTTTTGTGGGGTTGGGCTA ATGAGTCCGATGACCCTCTTCGTGACCAGGACAAGGGATGGGCCGGTATTCAGCTAATCCCGAGGACGGTGAGCCTAGACAAAAGTGGGAAGCAACTTCT GCAGTGGCCGGTTGAAGAGCTTAACGAACTAAGAAGCTCGAAGCCAATTCGAATCGAGTCCAAACAAATCAAGAAAGGTGAAAACATCAAAGTAAAACAA ACACTAACAGCAGCACAGGCTGACGTGGAGGTGACCTTCTCATTCAAAGACCTATCCAAAGCAGAGCCCTTCGATCCCAAATGGGCCGACCTTCCAGCCC AAGATGTCTGCAAGATCAAGGGCTCGACAGTGGAAGGTGGGCTTGGGCCTTTTGGGCTTCTAACTTTGGCATCCGAGAAGCTGGAGGAGTACACTCCGGT CATGTTCAGGGTGTTCAAAAAAGAGAAAACTCATGTTGTTCTCTTCTGCTCTGATGCCACCAGCTCTACTCTTACCCAAGAAGATAAGTTGTACAAGCCA TCATTTGCTGGATATGTGGATGTTGATTTGTCTGTGAGCAAGAAGATTTCCCTCAGAAGTTTGATCGATCACTCGGTGGTGGAGAGCTTCGCAGAAGGAG GGAAGACGGTGATAACGTCTAGGGTGTATCCAACAGTAGCAGTAATGGACAAAGCACACCTGTTCGTGTTCAACAATGGCACAGAAGAGATTAAGGTTGA TATGCTGTCGGCTTGGGACATGAAGAAGCCAGTTATGAACGTTCCTTTTGATAAGGCAGTTATTAAAAAGATTGAACAGTCTGAACTGTAA
AA sequence Show only first row Show all	>Lus10014219 pacid=23152948 polypeptide=Lus10014219 locus=Lus10014219.g ID=Lus10014219.BGIv1.0 annot-version=v1.0 MGVKTTIPSMLKAIAFCFVAVTIIGVEGSHKIYRELQSVPAKKVEQVHRTGYHFQPPKHWINDPNGPMFFNGFYHLFYQYNPKGAVWGNIVWAHSVSKDL INWEALEPAIEATKPFDAKGCWSGSATILPGNKPVLFYTGIDKKKRQLQNYAIPKNESDPYLREWVKPDKGNPFVEPDPSVNASAFRDPTTAWFNKGMWN TIIGSKHDLLGIAYLYKSKDFKKWTKAEKPLHQKEGTGMWECPDFYPVSTTGEKGLDTSVVGKDVKHVFKVSLDLTRFEYYTIGTYDVKNDKYIPDEGSI DSWAGIRYDYGNFYASKSFFDSKKQRRVLWGWANESDDPLRDQDKGWAGIQLIPRTVSLDKSGKQLLQWPVEELNELRSSKPIRIESKQIKKGENIKVKQ TLTAAQADVEVTFSFKDLSKAEPFDPKWADLPAQDVCKIKGSTVEGGLGPFGLLTLASEKLEEYTPVMFRVFKKEKTHVVLFCSDATSSTLTQEDKLYKP SFAGYVDVDLSVSKKISLRSLIDHSVVESFAEGGKTVITSRVYPTVAVMDKAHLFVFNNGTEEIKVDMLSAWDMKKPVMNVPFDKAVIKKIEQSEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014219 [exp]	0	1
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10032498 [exp]	4.2	0.7618
					Lus10038720 [exp]	4.6	0.8130
					Lus10027443 [exp]	7.7	0.7493
					Lus10005752 [exp]	10.0	0.7119
AT4G21870			HSP20-like chaperones superfam...		Lus10007666 [exp]	15.5	0.7030
AT3G18550	TCP	AtBRC1, ATTCP18...	BRANCHED 1, TCP family transcr...		Lus10021713 [exp]	15.5	0.7060
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Lus10018290 [exp]	15.6	0.6874
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10035240 [exp]	21.0	0.6772
AT5G47880		ERF1-1	eukaryotic release factor 1-1 ...		Lus10031479 [exp]	23.2	0.6886
AT3G62950			Thioredoxin superfamily protei...		Lus10005938 [exp]	23.5	0.6651

Compare expression of checked genes

Lus10014219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.