Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52570 212 / 4e-66 alpha/beta-Hydrolases superfamily protein (.1) AT3G11510 205 / 6e-66 Ribosomal protein S11 family protein (.1) AT2G36160 202 / 2e-64 Ribosomal protein S11 family protein (.1) AT3G52580 201 / 2e-64 Ribosomal protein S11 family protein (.1) AT4G10030 87 / 7e-19 alpha/beta-Hydrolases superfamily protein (.1) AT3G52590 74 / 4e-16 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT2G36170 74 / 4e-16 Ubiquitin supergroup;Ribosomal protein L40e (.1) ATCG00750 40 / 0.0004 ATCG00750.1, RPS11 ribosomal protein S11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016992 [exp] 445 / 4e-155 AT3G52570 433 / 1e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10021315 [exp] 443 / 3e-154 AT3G52570 397 / 2e-136 alpha/beta-Hydrolases superfamily protein (.1) Lus10022691 [exp] 303 / 2e-103 AT3G52570 224 / 5e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10022693 [exp] 230 / 3e-74 AT3G11510 261 / 2e-89 Ribosomal protein S11 family protein (.1) Lus10041047 [exp] 86 / 2e-18 AT4G10030 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10022695 [exp] 79 / 2e-18 AT2G36170 120 / 3e-37 Ubiquitin supergroup;Ribosomal protein L40e (.1) Lus10008873 [exp] 77 / 8e-17 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10006176 [exp] 45 / 6e-05 AT4G10030 238 / 7e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10023236 [exp] 39 / 0.0004 AT3G52590 84 / 1e-22 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G218700 [exp] 210 / 1e-67 AT3G52580 241 / 4e-83 Ribosomal protein S11 family protein (.1) Potri.009G019400 [exp] 210 / 1e-67 AT3G52580 241 / 4e-83 Ribosomal protein S11 family protein (.1) Potri.011G080500 [exp] 207 / 1e-66 AT3G52580 238 / 4e-82 Ribosomal protein S11 family protein (.1) Potri.004G131800 [exp] 206 / 2e-66 AT3G52580 235 / 7e-81 Ribosomal protein S11 family protein (.1) Potri.016G076550 [exp] 196 / 3e-61 AT3G52570 327 / 9e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G074600 [exp] 81 / 1e-16 AT4G10030 485 / 5e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G007100 [exp] 75 / 3e-16 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.012G024300 [exp] 75 / 3e-16 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.016G077200 [exp] 75 / 3e-16 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.016G077000 [exp] 71 / 4e-15 AT3G52590 194 / 1e-65 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF00411 [flax] [poplar] Ribosomal_S11 Ribosomal protein S11 CL0167 [flax] [poplar] Zn_Beta_Ribbon PF01020 [flax] [poplar] Ribosomal_L40e Ribosomal L40e family
Representative CDS sequence Show only first row Show all	>Lus10014220 pacid=23152914 polypeptide=Lus10014220 locus=Lus10014220.g ID=Lus10014220.BGIv1.0 annot-version=v1.0 ATGAACACCTGTCAGTTTCTGGACAAAGATGCAGAATTGCTAAAATCCAATTTCATAACTAGCTCAGCTATCTCAAAAGAGCATAGGAAATTTCTCTGGT TTTATCGTTTATTTACTGATGCAGAACAGCTCTGGGTGCTCGATTCTTTCCCTGGAGAGGTGAGCACAGACAACAGCGACGGAGAAGTAGAGAAAGTCTT GAAGACTTTACAGAGCTTCCCGCCATCAATTCCATCACGAAGCTGGCTCGTAAACCACCTGCTCGAGCTCGGATTCTCGAAGTCCTTGTCAGAATGGATA GGCACCAGCTTAAGGAAATCTGGTGAAATGGAGACATGGGCTTTCAATCTTGATGGACTTGTTGAAATGTTCAATTCTTACAGGGACACTTCATACTGGT CTCTCCTGGAACATCCTCCCAAAGAAATGGATATTGGACTTGTAGTTGCAGAGAACAGTGACCTTTGGGAAGCGAATGTGATCGAACGACTGGAAAGCCT TGCTGGAAGGGGAAGAGGTGAACCGTCAGAAGGATCATTCTCGCTTCATGCACTTCCGAACTCAGGCCATTGGAATCATGTGGATTCGAAGCGAAAGGTC AGGGAGCCCAAGGAGGAGACTGTTACCCTGGGTCCTAATGTCCCTGACGGAACCATTGTCTTCGGTGTTGCTCACATCTTTGCATCGTTCAACGACACCT TTATTCATGTCACTGATATTTCTGGCAGAGAAACTTTGGTTAGGATCACCGGTGGAATGAAGGTGAAAGCTGACAGGGATGAGTCCTCTCCCTACGCTGC TATGCTTGCAGCACAGGATGTTTCTACACGATGCAAGGAGCTGGGTATCAATGCTCTTCACATTAAGCTCCGAGCCACTGGTGGGAACAAGACCAAGACC CCTGGTCCTGGCGCTCAGTCAGCTCTCAGAGCTCTTGCCCGTTCTGGCATGAAGATTGGCCGCATTGAGTCGACTCTTCATCTTGTTCTGCGGCTCAGAG GAGGAATCATCGAGCCTTCTTTGATGGCTTTGGCGCGCAAGTACAATCAGGACAAAATGATTTGTCGCAAGTAA
AA sequence Show only first row Show all	>Lus10014220 pacid=23152914 polypeptide=Lus10014220 locus=Lus10014220.g ID=Lus10014220.BGIv1.0 annot-version=v1.0 MNTCQFLDKDAELLKSNFITSSAISKEHRKFLWFYRLFTDAEQLWVLDSFPGEVSTDNSDGEVEKVLKTLQSFPPSIPSRSWLVNHLLELGFSKSLSEWI GTSLRKSGEMETWAFNLDGLVEMFNSYRDTSYWSLLEHPPKEMDIGLVVAENSDLWEANVIERLESLAGRGRGEPSEGSFSLHALPNSGHWNHVDSKRKV REPKEETVTLGPNVPDGTIVFGVAHIFASFNDTFIHVTDISGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGINALHIKLRATGGNKTKT PGPGAQSALRALARSGMKIGRIESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11510			Ribosomal protein S11 family p...		Lus10014220 [exp]	0	1
AT4G18100			Ribosomal protein L32e (.1)		Lus10004589 [exp]	1.4	0.9008
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10007376 [exp]	2.8	0.8875
AT3G05560			Ribosomal L22e protein family ...		Lus10006509 [exp]	3.9	0.8834
AT3G22660			rRNA processing protein-relate...		Lus10031120 [exp]	4.0	0.8804
AT2G19740			Ribosomal protein L31e family ...		Lus10018032 [exp]	5.5	0.8773
AT1G41880			Ribosomal protein L35Ae family...		Lus10040235 [exp]	6.5	0.8742
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10027194 [exp]	7.2	0.8481
AT2G18110			Translation elongation factor...		Lus10013555 [exp]	7.5	0.8092
AT3G45030			Ribosomal protein S10p/S20e fa...		Lus10031706 [exp]	7.5	0.8697
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10035401 [exp]	7.7	0.8461

Compare expression of checked genes

Lus10014220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.