Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28830 68 / 9e-13 AtPUB12 PLANT U-BOX 12 (.1) AT3G46510 59 / 7e-10 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G23030 48 / 3e-06 PUB11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022690 [exp] 276 / 2e-94 AT2G28830 52 / 6e-08 PLANT U-BOX 12 (.1) Lus10016565 [exp] 53 / 9e-08 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 51 / 4e-07 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10024899 [exp] 45 / 4e-05 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10037970 [exp] 44 / 0.0001 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10038699 [exp] 44 / 0.0001 AT3G54850 599 / 0.0 plant U-box 14 (.1) Lus10022919 [exp] 43 / 0.0002 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10010499 [exp] 42 / 0.0003 AT4G16490 608 / 0.0 ARM repeat superfamily protein (.1) Lus10039047 [exp] 42 / 0.0005 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G251000 [exp] 225 / 7e-73 AT2G23140 63 / 1e-10 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.009G029600 [exp] 57 / 4e-09 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 57 / 6e-09 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.002G037700 [exp] 45 / 2e-05 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014221 pacid=23152887 polypeptide=Lus10014221 locus=Lus10014221.g ID=Lus10014221.BGIv1.0 annot-version=v1.0 ATGTTGTCAGCAAGGCGGCAGGAGACGATTGCAGCATATCTTTCTGATCTGAAATCAGATGCCTCCGTTGACTTCCAGCTGAAAGCTCTGAAAACTTTAG CTTCCATCACCAAGTATCACATGGCCGACATGGAAACAATCCACCGTCTCAATTCCTTAGTCGTCCTAGAAGCCAGCAGCAGCAGTAGGTTAGCAGCAGC ATGCTCTCTCATTTGCAGCTTGGCAATGCTAGACAAGAACAAAGCCAAGTTTGGAGTAGCCGGGACAGTCCAGGTTCTGGTCAAGGCCATTTCGTCCGGA CACCGAGCTAGTCAAGCAACCCACCATCTCCTCAGTTGCTTGGCGGAGCTGGTGCAGTTTCATGGGAATTGCACGTTGGCTGTTCGTGCCGGTGCGGTAA AGGTGCTGATGGGAATAGTTGATCAGAGCTCAGATGGGGAAGAAGATATTGCAGGGAAGTCACTGGCGATTTTGAATCTCCTAGCTAGGTTCGACGAAGG ATTGAGTGTGCTGATTAATACCAAGGATATGGTGAGATTCCTGATCGGGGGTTTGAAGATTAGGTGCATGACGAGCAAGGAAAGTTCAGCAGATATTCTA CTGAGGGTAATGGATGAAAGCGAGGAGTGTCTGAGGGATGCAACTCAGCTCCCTGATGAGTTGTTAACTCTATTAGCGGACATTTCTGTCACAGGATCAT CCAAAGCCAGGGACAAAGCTGCTCAGCTCATGAAGAAGATGACAGAAGAAGCTAACTTCGACACCTCCGTCATTTTGTCATCATGA
AA sequence Show only first row Show all	>Lus10014221 pacid=23152887 polypeptide=Lus10014221 locus=Lus10014221.g ID=Lus10014221.BGIv1.0 annot-version=v1.0 MLSARRQETIAAYLSDLKSDASVDFQLKALKTLASITKYHMADMETIHRLNSLVVLEASSSSRLAAACSLICSLAMLDKNKAKFGVAGTVQVLVKAISSG HRASQATHHLLSCLAELVQFHGNCTLAVRAGAVKVLMGIVDQSSDGEEDIAGKSLAILNLLARFDEGLSVLINTKDMVRFLIGGLKIRCMTSKESSADIL LRVMDESEECLRDATQLPDELLTLLADISVTGSSKARDKAAQLMKKMTEEANFDTSVILSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28830		AtPUB12	PLANT U-BOX 12 (.1)		Lus10014221 [exp]	0	1
AT1G03330			Small nuclear ribonucleoprotei...		Lus10000666 [exp]	11.7	0.8002
AT5G43600		ATAAH-2, UAH	ARABIDOPSIS THALIANA ALLANTOAT...		Lus10021221 [exp]	24.5	0.7151
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10033314 [exp]	31.0	0.6632
					Lus10040545 [exp]	48.5	0.6723
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10013551 [exp]	49.4	0.6725
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	61.0	0.6745
AT1G25290		ATRBL10	RHOMBOID-like protein 10 (.1.2...		Lus10022969 [exp]	66.1	0.6725
					Lus10000576 [exp]	84.8	0.6443
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	120.9	0.6311
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10002937 [exp]	159.8	0.6275

Compare expression of checked genes

Lus10014221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.