Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06130 295 / 1e-102 chaperone protein dnaJ-related (.1.2) AT5G61670 266 / 2e-90 unknown protein AT2G34860 44 / 1e-05 EDA3 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022688 [exp] 376 / 1e-133 AT5G06130 388 / 4e-136 chaperone protein dnaJ-related (.1.2) Lus10016993 [exp] 317 / 4e-110 AT5G06130 404 / 4e-142 chaperone protein dnaJ-related (.1.2) Lus10021316 [exp] 305 / 3e-106 AT5G06130 348 / 3e-122 chaperone protein dnaJ-related (.1.2) Lus10016713 [exp] 275 / 1e-93 AT5G61670 447 / 2e-159 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G210500 [exp] 330 / 2e-115 AT5G06130 401 / 2e-141 chaperone protein dnaJ-related (.1.2) Potri.012G114200 [exp] 272 / 1e-92 AT5G61670 380 / 3e-133 unknown protein Potri.001G009800 [exp] 46 / 3e-06 AT2G34860 201 / 6e-66 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014223 pacid=23152945 polypeptide=Lus10014223 locus=Lus10014223.g ID=Lus10014223.BGIv1.0 annot-version=v1.0 ATGCCTGAAATCCAATCCACAATCCCTTTCATTCCTCATCTGACGCCAAAGACGCTGAAGCAGCTGTACCTCACAAGCTTCTCATTCGTATCAGGGATTA TCGTCTTCGGAGGCCTTATTGCTCCTATTCTGGAAGTGAAACTAGGTATCGGTGGAACTTCGTACGAGGATTTCATAAGGAGCTTGCATTTGCCAATGCA GCTAAGCCAGGTTGATCCTATAGTGGCATCCTTTTCGGGTGGGGCAGTAGGTGTCATTTCAGCATTGATGTTGATCGAAGCGAACAATGTTGAGCAACAA GAGAAGAAGAGATGTAGATACTGCCATGGAACTGGATATTTGGCGTGTGCTCGCTGTGGTGGTGGTGGTGTGTGCTTGGATGTTAATCCCATCTCGATAT CCAGTGCTTCGGACAAACCACTGCGTGTTCCATCAACGCAAAGGTGTCCTAACTGCTCAAGTGCAGGAAAGGTGATGTGCCCGACATGTCTCTGCACCGG AATGGTGATGGCGAGCGAACATGATCCTCGAATTGATCCATTCGATTAA
AA sequence Show only first row Show all	>Lus10014223 pacid=23152945 polypeptide=Lus10014223 locus=Lus10014223.g ID=Lus10014223.BGIv1.0 annot-version=v1.0 MPEIQSTIPFIPHLTPKTLKQLYLTSFSFVSGIIVFGGLIAPILEVKLGIGGTSYEDFIRSLHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQ EKKRCRYCHGTGYLACARCGGGGVCLDVNPISISSASDKPLRVPSTQRCPNCSSAGKVMCPTCLCTGMVMASEHDPRIDPFD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06130			chaperone protein dnaJ-related...		Lus10014223 [exp]	0	1
AT5G06130			chaperone protein dnaJ-related...		Lus10022688 [exp]	1.7	0.8703
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10013959 [exp]	2.0	0.8780
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10006676 [exp]	5.8	0.8283
AT5G54940			Translation initiation factor ...		Lus10021532 [exp]	6.9	0.8869
AT1G67910			unknown protein		Lus10034901 [exp]	6.9	0.8639
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10018885 [exp]	11.7	0.8398
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10016320 [exp]	14.8	0.8342
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10012550 [exp]	19.3	0.8585
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10009120 [exp]	27.8	0.8231
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10022260 [exp]	31.6	0.8025

Compare expression of checked genes

Lus10014223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.