Plant FIBer expression Database

Lus10014224 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G36145 180 / 8e-58 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022687
[exp]
314 / 1e-110 AT2G36145 179 / 2e-57 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G210000
[exp]
203 / 7e-67 AT2G36145 178 / 6e-57 unknown protein
PFAM info
Representative CDS sequence
>Lus10014224 pacid=23152855 polypeptide=Lus10014224 locus=Lus10014224.g ID=Lus10014224.BGIv1.0 annot-version=v1.0
ATGGCTTCTTTAGCTCTCAAGCAACTGATCTACTCCACTTCCACTTCCAAATTGCATCCCTCTCCTCCTCCTCCTCTGCGATCTCACTCCGCCTCCGCAG
CAGGCGTTCACCACCGGCATCATTTCGGTCGCAGCAGCATCCTGAGCAACTTCACACCAGTACTAGTCCCCAAATCATCCTCTGGCAACGGCGGCATTGT
AGCTTCCGATGACGACCCAGAAGACGGAGTCTTGTTGGGTACCCTCAAACTCCCCGGAAACACCGATCTCGCCCGGTTTGAAACCTTGATGTTCCAGTGG
GGGAACAGTCTATCTCAGGGCTCTAATCTGCCATTCCCAGTTCCACTCAAGGTAGACAAAGTAGCAAGAGGAGCGAGGTTGGGGTTCATCACCGTCGACG
GCGGGGAGACGGAAGTTCCAGTGTACATAGACTGCTTGGTTTTCCCGGCAACCGGCTCCGACGGTCCGATCTTCAGAGCGATCAGGAACGGACGGCGGAA
GGGTGAAGCTGCGCCTGGAGAGGCCAGAATCATGAGAAGCCTCCTCGATGCGCTTCAGAAATCCGTCCAAATTGCTCGCCTTTAG
AA sequence
>Lus10014224 pacid=23152855 polypeptide=Lus10014224 locus=Lus10014224.g ID=Lus10014224.BGIv1.0 annot-version=v1.0
MASLALKQLIYSTSTSKLHPSPPPPLRSHSASAAGVHHRHHFGRSSILSNFTPVLVPKSSSGNGGIVASDDDPEDGVLLGTLKLPGNTDLARFETLMFQW
GNSLSQGSNLPFPVPLKVDKVARGARLGFITVDGGETEVPVYIDCLVFPATGSDGPIFRAIRNGRRKGEAAPGEARIMRSLLDALQKSVQIARL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G36145 unknown protein Lus10014224
[exp]
0 1
AT3G05170 Phosphoglycerate mutase family... Lus10024659
[exp]
1.0 0.9417
AT2G47400 CP12-1 CP12 domain-containing protein... Lus10025025
[exp]
4.2 0.9289
AT3G18870 Mitochondrial transcription te... Lus10026325
[exp]
5.2 0.9280
AT4G10300 RmlC-like cupins superfamily p... Lus10035659
[exp]
6.0 0.9081
AT2G40100 LHCB4.3 light harvesting complex photo... Lus10040191
[exp]
7.5 0.9258
AT4G09650 PDE332, ATPD PIGMENT DEFECTIVE 332, ATP syn... Lus10020508
[exp]
14.3 0.9135
AT3G21055 PSBTN photosystem II subunit T (.1) Lus10027359
[exp]
18.5 0.8981
AT5G42760 Leucine carboxyl methyltransfe... Lus10000713
[exp]
19.0 0.8890
AT3G06483 ATPDHK, PDK pyruvate dehydrogenase kinase ... Lus10018337
[exp]
21.1 0.8864
AT5G20935 unknown protein Lus10013382
[exp]
22.8 0.8854

Lus10014224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.