Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06140 620 / 0 ATSNX1 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) AT5G58440 110 / 5e-26 SNX2a sorting nexin 2A (.1) AT5G07120 101 / 9e-23 SNX2b sorting nexin 2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016994 [exp] 678 / 0 AT5G06140 650 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Lus10021317 [exp] 565 / 0 AT5G06140 523 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Lus10042247 [exp] 99 / 7e-22 AT5G07120 811 / 0.0 sorting nexin 2B (.1) Lus10026403 [exp] 92 / 1e-19 AT5G07120 753 / 0.0 sorting nexin 2B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G076400 [exp] 677 / 0 AT5G06140 664 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Potri.006G209600 [exp] 648 / 0 AT5G06140 635 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Potri.019G124200 [exp] 102 / 3e-23 AT5G07120 778 / 0.0 sorting nexin 2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [flax] [poplar] PX PX domain CL0145 [flax] [poplar] Golgi-transport PF09325 [flax] [poplar] Vps5 Vps5 C terminal like
Representative CDS sequence Show only first row Show all	>Lus10014225 pacid=23152921 polypeptide=Lus10014225 locus=Lus10014225.g ID=Lus10014225.BGIv1.0 annot-version=v1.0 ATGGACCAGCAGCAGAGGAGCTCCTCCGCCTCCGGCTACTCCCACAGCCCTCGATCTCCCTCCTCGCAGCAGCCTTACTTGTCGGTTTCCATCACCGATC CGGTGAAGCTGGGCAATGGCGTCCAAGCTTACATCTCGTATCGAGTTATCACCAAGACGAATCTGCCTGACTACAAAGGTCCTGAAAAGATCGTCATTCG GCGTTATAGTGATTTTGTCTGGTTACATGATCGTCTTTTCGAGAAATATAAGGGAGTTTTTATTCCTCCTCTACCAGAGAAGAGTGCTGTTGGTAAGGAC AAAAAGAATTCATATTTTGCATCTCTCATCTTTGGTTGTGCCAATTCCGGTCTTATTAATGAGGACAGCGAAGTGACTGTTACTCAGTTTGCTTGGATTT ATATGACAGAGAAGTTCCGTTTCAGTGCTGAATTTATTGAAATGAGGCGTCAAGCATTGGACATATTTGTAAACCGGATAGCCTCACACCAAGAACTTCA GCAAAGTGAAGATCTGCGCACCTTTTTGCAGGCAGATGAAGAGACAATGGAGAGATTAAGGTCCCAAGAGTTGAGCTATTTTAAGAAGCCAGCAGACTTG TTGCAAATCTTCAAGGATGTCCAGTCGAAAGTGAGTGATGTTGTTCTTGGGAAGGAAAAACCTCTCGAAGAATCAAATCCTGAATACGAAAAGATGAAGC ATTATATCTTTGAGCTCGAAAACCACTTGGCCGAGGCTCAAAAACATGCTTATCGTCTTGTAAAGCGACACCGAGAATTGGGACAATCGCTATCCGATTT CGGGAAGGCAGCTAAACTCCTTGGTGCTTGTGAAGGAGATGTCCTTGGGAAAGCATTGTCTGATCTTGGGGCAAAATCAGAGGCATTATCGCTTCGTCTA CAGAAGGAAGCAAATCAACTCCTGATGAATTTCGAAGAACCTTTGAAAGATTATGTCCGAGCTGTACAGTCAATTAAGGCAACCTTTGTCGAAAGAGCCA ACGCGTTCAGACATCAATGTGAACTTTCCGAAACAATGAAGCTGAAGGAGATTAATCTGGACAAGCTAATGCTGATGCGGTCCGACAGAGTGGGAGAGGC TGAATACGAATACAGAGAGTTAAAGGCAGAGAGCGAGGAGGCTGCCCGAAAATTCGAGAGCATTGTCCGGCTAATGAACGAAGAGATTGTACGTTTTCAA GAACAGAAAAAGATCGACATGGGGAGAGCATTTCACGAATTCGCAAAGGGACAGGCGCGGCTGGCGAATAGCATCGCGGATGGTTGGCGAAGTCTCCTCC CTAAGCTTGAAGCTTGTGCCGCATAG
AA sequence Show only first row Show all	>Lus10014225 pacid=23152921 polypeptide=Lus10014225 locus=Lus10014225.g ID=Lus10014225.BGIv1.0 annot-version=v1.0 MDQQQRSSSASGYSHSPRSPSSQQPYLSVSITDPVKLGNGVQAYISYRVITKTNLPDYKGPEKIVIRRYSDFVWLHDRLFEKYKGVFIPPLPEKSAVGKD KKNSYFASLIFGCANSGLINEDSEVTVTQFAWIYMTEKFRFSAEFIEMRRQALDIFVNRIASHQELQQSEDLRTFLQADEETMERLRSQELSYFKKPADL LQIFKDVQSKVSDVVLGKEKPLEESNPEYEKMKHYIFELENHLAEAQKHAYRLVKRHRELGQSLSDFGKAAKLLGACEGDVLGKALSDLGAKSEALSLRL QKEANQLLMNFEEPLKDYVRAVQSIKATFVERANAFRHQCELSETMKLKEINLDKLMLMRSDRVGEAEYEYRELKAESEEAARKFESIVRLMNEEIVRFQ EQKKIDMGRAFHEFAKGQARLANSIADGWRSLLPKLEACAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Lus10014225 [exp]	0	1
AT4G32140			EamA-like transporter family (...		Lus10041032 [exp]	1.7	0.9298
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10026486 [exp]	7.1	0.8896
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10002706 [exp]	18.2	0.9090
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10002453 [exp]	19.1	0.9176
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10008868 [exp]	20.1	0.8941
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10025309 [exp]	22.2	0.8924
AT4G19110			Protein kinase superfamily pro...		Lus10008303 [exp]	22.6	0.8945
AT3G59660			C2 domain-containing protein /...		Lus10027067 [exp]	23.7	0.8915
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10028858 [exp]	24.2	0.8980
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10035023 [exp]	25.6	0.9007

Compare expression of checked genes

Lus10014225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.