Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014161 [exp] 256 / 2e-83 AT5G53840 64 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10035564 [exp] 149 / 6e-43 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4) Lus10023776 [exp] 145 / 4e-41 AT3G51630 61 / 6e-10 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10006513 [exp] 124 / 1e-32 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10026868 [exp] 120 / 1e-32 ND 41 / 6e-04 Lus10029433 [exp] 120 / 2e-31 AT3G18150 79 / 8e-16 RNI-like superfamily protein (.1) Lus10038470 [exp] 110 / 3e-28 ND / Lus10038468 [exp] 110 / 3e-28 ND / Lus10027244 [exp] 102 / 1e-24 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 50 / 8e-07 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014229 pacid=23152861 polypeptide=Lus10014229 locus=Lus10014229.g ID=Lus10014229.BGIv1.0 annot-version=v1.0 ATGGTTGATGTGATCTCAAAGAGGAAAGATATGGAGTGTACTACTGAGCAAGTCGTTAGTTGCTTTCTCGAAGGCGGGGCTGTCGATTTGGACAAGGAGG TGGAAATATGTAACGTTCTCATTTTCGATGGCTACTCCTTCCGTTCTGGGCGAAGTTTCGAGCAGCACACAGACCGAGTTATATCCCTCCGCTCCGACAG TAGTAGCGTTAGCGGGGTTGCGGTCGACTTCTCAGTAACAGACCGAGAGAGGATGGAAAATATGTTGGATAGGATCGCTAAATACGCTGCTTCCCATGAC GTTCAAGAGCTATTCATTCGTCCTGCTGGCTTGGGCAGCTTTCCGGATCTCTTCAGATCATTATACGCCAGTCATGGGTCCCTGAAAGTTCTGGAGTTGG ACTCAACATTTTCTCCAGAGGCTTATGGTGAATTGTGGTCTTGTCTTCAAATGCTTGAATCTCTTACTCTATTTGCATGCAGCCTTAATTTGGGTTATGA TGCCTTCGGCAATTTGCCCAGATTGGAGAGCCTAAAGCTGATTAAGTGTAGTCCTTATTTCGGCAGGAGTGGTGGTGTTCTGAAAGTAATTGGACCCAAA CTGCTTAAGCTGGAGATTGATTCGTCGCAATTCACCAGTCTTGAAATCATGGCTCCCAAGCTCCAATCTTTCACTTTTAGGTTGATTTATGTAAAATACA AGATGTGTCCAACTCGAATCTTCCTTGCCTTAATCATGCAAACTTGCCACATATTTAGGTCTTGTAGTGACAATTATGCCGACAAGCAATTAGGAGTGCT CAAGCAATGTCTGAACTTGTTCAAAATCCCTGGCCGTTGGATTCCTACCGCATGCCACTTAGCTCTGTAA
AA sequence Show only first row Show all	>Lus10014229 pacid=23152861 polypeptide=Lus10014229 locus=Lus10014229.g ID=Lus10014229.BGIv1.0 annot-version=v1.0 MVDVISKRKDMECTTEQVVSCFLEGGAVDLDKEVEICNVLIFDGYSFRSGRSFEQHTDRVISLRSDSSSVSGVAVDFSVTDRERMENMLDRIAKYAASHD VQELFIRPAGLGSFPDLFRSLYASHGSLKVLELDSTFSPEAYGELWSCLQMLESLTLFACSLNLGYDAFGNLPRLESLKLIKCSPYFGRSGGVLKVIGPK LLKLEIDSSQFTSLEIMAPKLQSFTFRLIYVKYKMCPTRIFLALIMQTCHIFRSCSDNYADKQLGVLKQCLNLFKIPGRWIPTACHLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10014229 [exp]	0	1
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	3.6	1.0000
					Lus10002009 [exp]	4.0	1.0000
					Lus10002449 [exp]	4.9	1.0000
					Lus10025056 [exp]	6.0	1.0000
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10006195 [exp]	6.3	1.0000
					Lus10006079 [exp]	6.6	1.0000
AT5G19580			glyoxal oxidase-related protei...		Lus10011111 [exp]	6.9	1.0000
AT3G26140			Cellulase (glycosyl hydrolase ...		Lus10032312 [exp]	7.4	1.0000
AT2G21720			Plant protein of unknown funct...		Lus10007431 [exp]	8.7	1.0000
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10023578 [exp]	8.8	1.0000

Compare expression of checked genes

Lus10014229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.