Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33110 508 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G33120 486 / 2e-173 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G23510 85 / 6e-18 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23530 84 / 1e-17 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23480 78 / 1e-15 Cyclopropane-fatty-acyl-phospholipid synthase (.1.2) AT3G23470 75 / 1e-14 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G18000 55 / 4e-08 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G48600 52 / 4e-07 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G73600 50 / 9e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G13710 49 / 2e-06 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022684 [exp] 670 / 0 AT4G33110 516 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10023741 [exp] 97 / 7e-22 AT3G23530 1294 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10011784 [exp] 92 / 3e-20 AT3G23530 1253 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10031348 [exp] 51 / 8e-07 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009056 [exp] 51 / 8e-07 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018010 [exp] 50 / 2e-06 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042006 [exp] 48 / 6e-06 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G060000 [exp] 570 / 0 AT4G33110 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G067800 [exp] 89 / 2e-19 AT3G23510 650 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067567 [exp] 87 / 8e-19 AT3G23510 640 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.008G170300 [exp] 86 / 4e-18 AT3G23510 1408 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067700 [exp] 85 / 4e-18 AT3G23530 652 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067600 [exp] 84 / 1e-17 AT3G23510 647 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067900 [exp] 84 / 2e-17 AT3G23530 1392 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.001G263700 [exp] 54 / 6e-08 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.012G047400 [exp] 53 / 2e-07 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.015G039000 [exp] 51 / 9e-07 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02353 [flax] [poplar] CMAS Mycolic acid cyclopropane synthetase
Representative CDS sequence Show only first row Show all	>Lus10014230 pacid=23152894 polypeptide=Lus10014230 locus=Lus10014230.g ID=Lus10014230.BGIv1.0 annot-version=v1.0 ATGGAGGGCTTAATCCAGATTCCTTACAACGCCTCAGTGAAGTTCGTTTTGGGTTCCATGGAGCGGAATCTTTTGCCGGATGTCGTAATTCGGAAGCTCA CCCGTCTGATGTTGGGAGTTCGTCTCCGATGGGGTTACAAGGCTTCTGCTGAGCTTCAGCTCTCAGATCTCCTCTGCTTCGTACATTCTCTTAAGGATTT GCCCATCGCCATCCAGACGGAGAAGCCGAAAGAACAGCACTACGAAGTACCCACTTCGTTTTTCAAGCTTGTTCTTGGCAAAAATCTCAAATACAGTTGT TGCTATTTCTCTGATAAGAAAAGCACCCTGGAGGAAGCAGAGGATGCGATGCTAGAATTATATTGCGAGAGATCGGAGCTGAAAGACGGGCAGAGTATTC TTGATGTCGGGTGTGGATGGGGATCACTGGTTCTATACATAGCACAAAAGTATAGTAACTGTAAAGTGACTGGGATTTGCAATTCCACCACCCAGAAAGC ATTCATTGAGGAGCAATGCCGGGACCGTCAGTTGCAGAATGTCGAGATTATTGTCGCGGATATGAGCACATTCGAAATGGACGATGCTTCGTTCGATCGG ATATATTCGATCGAGATGTTCGAGATATCCAAGTGGATGAACCAAGATGGCCGTCTATTTGTCCATCATTTCTGCCATAAGGTGTTCCCTTATCATTTCG AGGATAAATATGAGGAGGATTGGCTTGCTAGGTACTTCTTCAGTGGAGGCACGATGCCTTCCGCAAATCTCTTGCTGTATTTCCAGGATGACGTGTCGGT GGTCAACCAATGGCATGTGAATGGGAATCACTATGCACAAACAAGCGAGGAGTGGCTGAAGAGAATGGACAAGAACATGAACATCATCAAACCAATAATG GCGGCCACCTATGGCAAAGATCAGGCTGTGAAATGGACTGTCTATTGGCGGACATTCTTCATGGGAGTTGCTGAGCTCTTCAGATATAACAATGGCGAAG AATGGTTGGTCACTCATTACCTTTTCAAGAAGAAATGA
AA sequence Show only first row Show all	>Lus10014230 pacid=23152894 polypeptide=Lus10014230 locus=Lus10014230.g ID=Lus10014230.BGIv1.0 annot-version=v1.0 MEGLIQIPYNASVKFVLGSMERNLLPDVVIRKLTRLMLGVRLRWGYKASAELQLSDLLCFVHSLKDLPIAIQTEKPKEQHYEVPTSFFKLVLGKNLKYSC CYFSDKKSTLEEAEDAMLELYCERSELKDGQSILDVGCGWGSLVLYIAQKYSNCKVTGICNSTTQKAFIEEQCRDRQLQNVEIIVADMSTFEMDDASFDR IYSIEMFEISKWMNQDGRLFVHHFCHKVFPYHFEDKYEEDWLARYFFSGGTMPSANLLLYFQDDVSVVNQWHVNGNHYAQTSEEWLKRMDKNMNIIKPIM AATYGKDQAVKWTVYWRTFFMGVAELFRYNNGEEWLVTHYLFKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33110			S-adenosyl-L-methionine-depend...		Lus10014230 [exp]	0	1
AT3G59040			Tetratricopeptide repeat (TPR)...		Lus10027829 [exp]	9.6	0.8372
AT3G21300			RNA methyltransferase family p...		Lus10009743 [exp]	16.2	0.8264
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10009166 [exp]	22.1	0.8362
AT5G25080			Sas10/Utp3/C1D family (.1)		Lus10026882 [exp]	25.1	0.8026
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10012603 [exp]	29.4	0.8008
AT1G14270			CAAX amino terminal protease f...		Lus10036748 [exp]	34.6	0.8177
AT3G48210			unknown protein		Lus10042089 [exp]	34.6	0.8051
AT1G47740			PPPDE putative thiol peptidase...		Lus10032708 [exp]	36.4	0.7905
AT3G15520			Cyclophilin-like peptidyl-prol...		Lus10038601 [exp]	37.3	0.8256
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Lus10011784 [exp]	39.1	0.8108

Compare expression of checked genes

Lus10014230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.