Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01700 360 / 2e-120 Protein phosphatase 2C family protein (.1.2) AT5G36250 344 / 1e-113 Protein phosphatase 2C family protein (.1) AT3G02750 325 / 1e-105 Protein phosphatase 2C family protein (.1.2.3) AT1G79630 323 / 2e-104 Protein phosphatase 2C family protein (.1.2.3) AT1G16220 321 / 5e-104 Protein phosphatase 2C family protein (.1) AT1G03590 319 / 9e-104 Protein phosphatase 2C family protein (.1) AT4G03415 316 / 3e-102 Protein phosphatase 2C family protein (.1.2) AT5G27930 285 / 8e-92 Protein phosphatase 2C family protein (.1.2) AT3G16800 281 / 3e-90 Protein phosphatase 2C family protein (.1.2.3) AT3G05640 277 / 1e-88 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022683 [exp] 824 / 0 AT3G02750 352 / 9e-119 Protein phosphatase 2C family protein (.1.2.3) Lus10001268 [exp] 680 / 0 AT5G01700 365 / 8e-124 Protein phosphatase 2C family protein (.1.2) Lus10012218 [exp] 660 / 0 AT5G36250 353 / 3e-118 Protein phosphatase 2C family protein (.1) Lus10039802 [exp] 331 / 7e-108 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10018570 [exp] 329 / 2e-107 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10022588 [exp] 323 / 5e-106 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10000402 [exp] 326 / 1e-105 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10027122 [exp] 322 / 7e-104 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10031631 [exp] 318 / 2e-103 AT1G03590 600 / 0.0 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105000 [exp] 543 / 0 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.016G127900 [exp] 532 / 0 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.019G054200 [exp] 353 / 2e-116 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 336 / 6e-110 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.019G103100 [exp] 333 / 1e-108 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 331 / 4e-108 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G066200 [exp] 323 / 6e-105 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.001G473300 [exp] 321 / 7e-104 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.018G059800 [exp] 311 / 3e-102 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1) Potri.010G006200 [exp] 299 / 6e-97 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10014231 pacid=23152853 polypeptide=Lus10014231 locus=Lus10014231.g ID=Lus10014231.BGIv1.0 annot-version=v1.0 ATGGGAGCCTGTTGCAGCACCGAGATCCATTTCGGCTCCGATGCTGCAGACAACGATGCTACAGAACGTAAAGATTACGAAGTCGACAGCGACGAAGAAG ATGACAATGTCATCGTCGGCGATTACGGTGCCCGAATCCGCCTCCATGGCGCCTCCAAATACATCTCCATGTTCACCCAACAGGGGAAGAAAGGCGTCAA TCAAGACTCCATGACCGTCTGGGAGGAATTCGCAGGGGACAAAGAGATGACATTTTGCGGGGTGTTTGATGGCCATGGGCCTTGCGGTCACAAGGTTGCG CGCCACGTTCGAGACAATTTAGCATCGAAGCTCTCGAGCGGGATCAAATTGTCGCAGCTTAATGTTAGATTGGATTGCGGTGACGTAGATAGTGATCACG AGTCCATTAAACCGAATGATGCTAAAAGTTCGTTCATCTTATCGTCGTGGGAAACACTTTTGACGAAATGCTTCAAGGAAATGGACGAGGAACTCAGCCT CGACGCCAGCATTGACAGCTACTGCAGCGGCGCCACTGCTGTCTCCGTAATGAAGAAGGGCAGGCATTTGTTGATAACGAACTTGGGCGATTCTCGAGCA GTTCTTTGCCGAAAAGGCAATCAAAACCAGTTGATACCGGTCCAACTCACCGTCGATTTGAAACCCAATGTCCCAAGCGAAGCGGAAAGGATCAAGGAGA AAAACGGGAGAGTGTTTGCAATGGAGGAAGAACCTCACATTTTCAGAGTATGGATGCCAGATGAAGACTGCCCTGGTCTGGCAATGGCGAGAGCATTCGG AGATTTCTGCCTCAAGGATTGCGGCCTCATTTCGACTCCTCAAGTTTCGTACAGAACGCTCACGAACGATGATGAATTCATTGTTCTAGCCACCGACGGA ATATGGGACGTGCTAACGAACGCCGAGGTGGTGAACATAGTGGCATCAGCAAGGAAGAGATCGATGGCGGCCAAGTTACTAGTTAAATACGCGGTCCGAC TATGGAGAACCAGACACCCGGGCAGCAGGATCGACGACTGCACGGTCGTGTGCCTGTTCCTGAAAAGCAAAACAACCCTGACCAGGTCGTTCTCTGAAGT GAGCCGAGTGAGTGCTAACCACACAGAGCTAGCAGACAACTTCTCGGAAGTGAGCAGGGCCAGCGTCCACCATTCGGAGATCGCAGTTGTGCCTTTGAAG TCCAGACCCGGGCGTCCGCCTGCTGGACCCGACGCTAAAACCAACAGCGGCTTATATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATCAAAATAATTTTTAACC GACCCTCATAA
AA sequence Show only first row Show all	>Lus10014231 pacid=23152853 polypeptide=Lus10014231 locus=Lus10014231.g ID=Lus10014231.BGIv1.0 annot-version=v1.0 MGACCSTEIHFGSDAADNDATERKDYEVDSDEEDDNVIVGDYGARIRLHGASKYISMFTQQGKKGVNQDSMTVWEEFAGDKEMTFCGVFDGHGPCGHKVA RHVRDNLASKLSSGIKLSQLNVRLDCGDVDSDHESIKPNDAKSSFILSSWETLLTKCFKEMDEELSLDASIDSYCSGATAVSVMKKGRHLLITNLGDSRA VLCRKGNQNQLIPVQLTVDLKPNVPSEAERIKEKNGRVFAMEEEPHIFRVWMPDEDCPGLAMARAFGDFCLKDCGLISTPQVSYRTLTNDDEFIVLATDG IWDVLTNAEVVNIVASARKRSMAAKLLVKYAVRLWRTRHPGSRIDDCTVVCLFLKSKTTLTRSFSEVSRVSANHTELADNFSEVSRASVHHSEIAVVPLK SRPGRPPAGPDAKTNSGLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXIKIIFNRPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01700			Protein phosphatase 2C family ...		Lus10014231 [exp]	0	1
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	4.0	0.9269
AT3G46540			ENTH/VHS family protein (.1)		Lus10001692 [exp]	7.3	0.8401
AT5G15430			Plant calmodulin-binding prote...		Lus10000209 [exp]	8.5	0.9204
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002775 [exp]	9.6	0.9105
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10023171 [exp]	9.7	0.8434
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10029859 [exp]	14.3	0.8980
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10020741 [exp]	16.3	0.8939
AT5G27870			Plant invertase/pectin methyle...		Lus10037489 [exp]	16.5	0.8878
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	16.6	0.9006
					Lus10018443 [exp]	17.5	0.8774

Compare expression of checked genes

Lus10014231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.