Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01710 697 / 0 methyltransferases (.1) AT3G53400 136 / 8e-35 unknown protein AT5G03190 134 / 6e-34 CPuORF47 conserved peptide upstream open reading frame 47 (.1.2.3) AT1G24480 111 / 1e-27 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G24805 102 / 1e-24 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G58120 70 / 9e-13 unknown protein AT2G16030 59 / 1e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26730 41 / 0.0008 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022682 [exp] 934 / 0 AT5G01710 698 / 0.0 methyltransferases (.1) Lus10012217 [exp] 780 / 0 AT5G01710 733 / 0.0 methyltransferases (.1) Lus10001267 [exp] 777 / 0 AT5G01710 737 / 0.0 methyltransferases (.1) Lus10019932 [exp] 139 / 7e-36 AT3G53400 385 / 1e-130 unknown protein Lus10026502 [exp] 139 / 7e-36 AT3G53400 392 / 1e-133 unknown protein Lus10036941 [exp] 108 / 2e-26 AT1G24480 354 / 1e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10006247 [exp] 106 / 8e-26 AT1G24480 348 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013662 [exp] 92 / 9e-21 AT4G24805 299 / 1e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10039718 [exp] 84 / 3e-18 AT2G16030 267 / 7e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128100 [exp] 711 / 0 AT5G01710 740 / 0.0 methyltransferases (.1) Potri.006G105100 [exp] 688 / 0 AT5G01710 720 / 0.0 methyltransferases (.1) Potri.013G153300 [exp] 505 / 1e-176 AT5G01710 498 / 1e-173 methyltransferases (.1) Potri.016G088900 [exp] 154 / 2e-41 AT3G53400 420 / 6e-144 unknown protein Potri.006G128800 [exp] 142 / 6e-37 AT3G53400 418 / 3e-143 unknown protein Potri.010G052100 [exp] 111 / 8e-28 AT1G24480 327 / 5e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G088400 [exp] 99 / 2e-23 AT1G24480 302 / 3e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G047700 [exp] 97 / 1e-21 AT1G58120 254 / 6e-81 unknown protein Potri.007G113200 [exp] 86 / 7e-18 AT1G58120 252 / 6e-80 unknown protein Potri.002G104500 [exp] 84 / 3e-17 AT1G58120 283 / 1e-91 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014232 pacid=23152856 polypeptide=Lus10014232 locus=Lus10014232.g ID=Lus10014232.BGIv1.0 annot-version=v1.0 ATGGAGCCCAAACCCAGCTTCTTCAGGAACGTTCTAGCGCGGGTGCTCATCTTCGGCGTCCTACTAATCGTCGTCCGCTTCGCCTACGTCGTCACAATCG CCGGGGAGTCCTGCATTGTCGGCGACTTCTGCTTCTTCTCCCTCCCGGATAATTTCATCTCCGTCACTGGCGGCGGAGCCGCCGCCGCCGTCCGGATGAA CGATGGGGGTCTCTACACCAGCAAGGACTGGATCAGTTCCGTCCAGTTCTACTCCTCCGTCTTCCAGGATTTGATCTCCGACGGTTACCTCTCTCCGAAT TCGAAGTCTCTCTGCGTGGAGACGCCGTTGGGCCAGGAGGTGTTCGCCCTGCAGGAGATCGGAGTTTCCGATTCGATCGGGTTGTTTAAGAAGGCGTCGA AACCGCTGGTGATCTCCAGCAAATTGAAGAAGAAGATTCCGTTCGACGATGACACGTTCAACTTTATCTTCTCCGGCGGAGGCCGATTCGACACAGTGCT GCAGCCGCTTGATTTGGCATCGGAGATTGCTCGGACGATGAAACCCGAAGGGTTTCTCGTGGTCCACGTCAGTGCGAAAGATACGTACAGTTTCGATTCT TTCCTTGGTTTATTCAATTCCTGTAAATTGGTGAGGTCTCGTAATCTTGACGGATATGATTCTTCAATTAGAGAGATTATACTGCAAAAGCACGGCCAGA TTATTACTCAAACTACTCAGATTCTTAGTTCAGGAAATAGACAGTGTTTGGTTCCAGCGCACAAACTGGATTTGGTTCGTGATGCTGAGCCTTTGATTGA ACAGGAGCCATTGAAGCCATGGCTAACTCTGAAGAGAAATGTGAAGAACATTAAGTATTTACCTTCCATGGCTGATATAAGCTTTAAGAACAGATATGTG TACGTTGATATTGGAGCAAGAAGCTACGGCTCTAGTATAGGGAGCTGGTTTAAGAAACAGTACCCTAAGCAGAACAAGACGTTTGATGTGTATGCAATCG AAGCTGATAAAAGATTCCACGAAGAGTATAAGACTAAATCGAAGAAAGGCGTCGCATTGCTTCCTTATGCTGCTTGGGTGAAGAACGAGACTTTGTCGTT CGAAATCCATGGAGATCCTGGCGAGGATGCCTCGGCTAAAGGAAGAGGAATGGGGAGAATTCAGCCGGTTAATCCCTTGGCTGGAGGATTCGAGGGAGTG GTGGATGAGATTGAAGGGTTTGATTTTGCAATGTGGTTGAAGAGGACAGTGACGGAGAAAGATTTCGTGGTTATGAAGATGGACGTGGAAGGGACTGAGT TCGATCTGATACCGAAGTTGTTCGAAACCGGAGCGATTTGTTTGATTGATGAGCTCTTTCTTGAATGCCATTACAATAGGTGGCAGAGATGTTGCCCTGG ACAGAGAAGCCCCAAATACGAGAAAACTTACGAGCAGTGCTTGGATTTGTTCTCGTCCCTCAGAGAAAGCGGAGTCCTTGTTCATCAATGGTTTTGA
AA sequence Show only first row Show all	>Lus10014232 pacid=23152856 polypeptide=Lus10014232 locus=Lus10014232.g ID=Lus10014232.BGIv1.0 annot-version=v1.0 MEPKPSFFRNVLARVLIFGVLLIVVRFAYVVTIAGESCIVGDFCFFSLPDNFISVTGGGAAAAVRMNDGGLYTSKDWISSVQFYSSVFQDLISDGYLSPN SKSLCVETPLGQEVFALQEIGVSDSIGLFKKASKPLVISSKLKKKIPFDDDTFNFIFSGGGRFDTVLQPLDLASEIARTMKPEGFLVVHVSAKDTYSFDS FLGLFNSCKLVRSRNLDGYDSSIREIILQKHGQIITQTTQILSSGNRQCLVPAHKLDLVRDAEPLIEQEPLKPWLTLKRNVKNIKYLPSMADISFKNRYV YVDIGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKRFHEEYKTKSKKGVALLPYAAWVKNETLSFEIHGDPGEDASAKGRGMGRIQPVNPLAGGFEGV VDEIEGFDFAMWLKRTVTEKDFVVMKMDVEGTEFDLIPKLFETGAICLIDELFLECHYNRWQRCCPGQRSPKYEKTYEQCLDLFSSLRESGVLVHQWF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01710			methyltransferases (.1)		Lus10014232 [exp]	0	1
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10009270 [exp]	3.3	0.9095
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10015496 [exp]	5.5	0.8921
AT3G21570			unknown protein		Lus10034002 [exp]	6.3	0.8912
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10009271 [exp]	6.3	0.8929
AT3G07790			DGCR14-related (.1)		Lus10006367 [exp]	7.5	0.8867
AT3G21570			unknown protein		Lus10012773 [exp]	8.5	0.8869
AT1G66400		CML23	calmodulin like 23 (.1)		Lus10028516 [exp]	8.5	0.8861
AT1G18740			Protein of unknown function (D...		Lus10028578 [exp]	9.9	0.8847
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10041905 [exp]	11.0	0.8610
AT5G39865			Glutaredoxin family protein (....		Lus10001669 [exp]	11.4	0.8824

Compare expression of checked genes

Lus10014232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.