Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38360 141 / 2e-42 PRA1.B4 prenylated RAB acceptor 1.B4 (.1) AT5G01640 123 / 2e-35 PRA1.B5 prenylated RAB acceptor 1.B5 (.1) AT5G05380 116 / 5e-33 PRA1.B3 prenylated RAB acceptor 1.B3 (.1) AT3G56110 111 / 6e-31 PRA1.B1 prenylated RAB acceptor 1.B1 (.1.2) AT2G40380 110 / 2e-30 PRA1.B2 prenylated RAB acceptor 1.B2 (.1) AT5G07110 95 / 2e-24 PRA1.B6 prenylated RAB acceptor 1.B6 (.1) AT4G00005 73 / 3e-17 PRA1 (Prenylated rab acceptor) family protein (.1) AT1G55190 52 / 1e-08 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) AT1G08770 51 / 3e-08 PRA1.E prenylated RAB acceptor 1.E (.1) AT3G13710 50 / 8e-08 PRA1.F4 prenylated RAB acceptor 1.F4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022680 [exp] 178 / 1e-57 AT2G38360 232 / 1e-78 prenylated RAB acceptor 1.B4 (.1) Lus10002853 [exp] 155 / 8e-48 AT2G38360 305 / 4e-106 prenylated RAB acceptor 1.B4 (.1) Lus10012224 [exp] 147 / 8e-45 AT2G38360 310 / 3e-108 prenylated RAB acceptor 1.B4 (.1) Lus10042246 [exp] 125 / 7e-36 AT2G38360 250 / 4e-84 prenylated RAB acceptor 1.B4 (.1) Lus10026404 [exp] 122 / 2e-35 AT2G38360 253 / 5e-86 prenylated RAB acceptor 1.B4 (.1) Lus10009842 [exp] 115 / 3e-32 AT2G38360 278 / 1e-95 prenylated RAB acceptor 1.B4 (.1) Lus10017425 [exp] 114 / 6e-32 AT2G38360 281 / 9e-97 prenylated RAB acceptor 1.B4 (.1) Lus10007533 [exp] 112 / 3e-31 AT2G38360 281 / 6e-97 prenylated RAB acceptor 1.B4 (.1) Lus10042099 [exp] 75 / 2e-18 AT2G38360 82 / 5e-21 prenylated RAB acceptor 1.B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G074000 [exp] 127 / 3e-37 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2) Potri.008G074033 [exp] 127 / 3e-37 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2) Potri.010G183300 [exp] 126 / 9e-37 AT3G56110 239 / 9e-81 prenylated RAB acceptor 1.B1 (.1.2) Potri.016G126400 [exp] 122 / 2e-35 AT2G38360 209 / 2e-68 prenylated RAB acceptor 1.B4 (.1) Potri.006G104400 [exp] 115 / 1e-32 AT2G38360 206 / 5e-67 prenylated RAB acceptor 1.B4 (.1) Potri.019G124100 [exp] 105 / 6e-29 AT5G05380 140 / 8e-42 prenylated RAB acceptor 1.B3 (.1) Potri.002G044000 [exp] 66 / 7e-14 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G043800 [exp] 66 / 1e-13 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G219100 [exp] 66 / 2e-13 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G054700 [exp] 59 / 4e-11 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10014234 pacid=23152952 polypeptide=Lus10014234 locus=Lus10014234.g ID=Lus10014234.BGIv1.0 annot-version=v1.0 ATGGCTGCCGTCGCCGCTCAATCTCCCCCGATCGTCCCGATCTCCAATTCCCAATCGGCCCCATCCTTAACCACCACCGTCGTCAATCCTTCCTCCTCCT CCTCGCAGCCGCCCCCCCCCCCTCCCCGCTCCCGCCCCACCAGCCCCCCTCCAATCTCGCTCATGTTCCTCGTCGGCCTCCTCGCGTCCTGGATCTTCCT CTACCTGTTCCGCCCCGCGGATCAGCCGCTTGTGTTCTTCGGACGGAGCTTCACCGACATGGAGACGCTCGGGATCCTCGTCGTGTTCAGTGTATTTGTC GTGTTCCTCACCAACGTCGGATCTGTGCTCATCTCGGCGGTGATGCTCGGCTCGGCGGTCGTCTGTGCACATGGATCGTTTAGGATCCCTGAGGATATGT TCTTGGATGAGCAGGAGCCATCCGCTGCAAGTGGATTCCTCTCGTTCCTTGGTGGTGCTGCGACGAATGTGGCTGCCACGACTGCTGCTCGCGTCTGA
AA sequence Show only first row Show all	>Lus10014234 pacid=23152952 polypeptide=Lus10014234 locus=Lus10014234.g ID=Lus10014234.BGIv1.0 annot-version=v1.0 MAAVAAQSPPIVPISNSQSAPSLTTTVVNPSSSSSQPPPPPPRSRPTSPPPISLMFLVGLLASWIFLYLFRPADQPLVFFGRSFTDMETLGILVVFSVFV VFLTNVGSVLISAVMLGSAVVCAHGSFRIPEDMFLDEQEPSAASGFLSFLGGAATNVAATTAARV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10014234 [exp]	0	1
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Lus10010070 [exp]	1.0	0.9781
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10037096 [exp]	2.8	0.9754
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Lus10036887 [exp]	3.0	0.9646
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10024859 [exp]	3.2	0.9597
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10005504 [exp]	4.7	0.9364
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10036886 [exp]	4.9	0.9587
AT1G14890			Plant invertase/pectin methyle...		Lus10037919 [exp]	5.1	0.9280
AT5G67540			Arabinanase/levansucrase/inver...		Lus10019280 [exp]	5.5	0.9342
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10004522 [exp]	5.7	0.9525
AT4G08810		SUB1	calcium ion binding (.1)		Lus10013761 [exp]	5.9	0.9557

Compare expression of checked genes

Lus10014234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.