Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51740 858 / 0 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT3G56100 665 / 0 IMK3, MRLK meristematic receptor-like kinase (.1) AT5G05160 305 / 2e-93 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT3G08680 304 / 3e-93 Leucine-rich repeat protein kinase family protein (.1.2) AT5G63930 309 / 2e-91 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 295 / 1e-89 Leucine-rich repeat protein kinase family protein (.1.2) AT1G48480 280 / 5e-84 RKL1 receptor-like kinase 1 (.1) AT3G02880 271 / 4e-81 Leucine-rich repeat protein kinase family protein (.1) AT5G62230 278 / 8e-81 ERL1 ERECTA-like 1 (.1.2) AT4G36180 280 / 1e-80 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022679 [exp] 1259 / 0 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014236 [exp] 919 / 0 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022678 [exp] 903 / 0 AT3G51740 885 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10012225 [exp] 654 / 0 AT3G51740 679 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10019113 [exp] 316 / 1e-97 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 312 / 3e-96 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 310 / 2e-95 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 310 / 2e-95 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 305 / 2e-93 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G126300 [exp] 954 / 0 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G104300 [exp] 920 / 0 AT3G51740 996 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.010G183400 [exp] 910 / 0 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.018G074300 [exp] 349 / 3e-110 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 323 / 1e-99 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G136100 [exp] 311 / 3e-96 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 310 / 1e-95 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G095200 [exp] 310 / 2e-95 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 303 / 5e-93 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G137000 [exp] 285 / 3e-83 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014235 pacid=23152892 polypeptide=Lus10014235 locus=Lus10014235.g ID=Lus10014235.BGIv1.0 annot-version=v1.0 ATGGAAAGACACACATTATTCCCACTCTTCTTCCTCTTCTCGATCTTACTCGTTTCAGCTACTTCGCAGAAATGGGACGGGGTAATCGTGACCCAATCCG ACTACCAGTCCCTCCGAGCAATCAAGAACGAGCTCGTCGATCTCCGGGGAGCCCTCCGAAGCTGGAATGACACCAACGGGGTCGGTGTGTGCTCCGGCGG GTGGGCCGGGATCAAATGCGCCAAGGGACAGGTGATTCTCATCCAGCTTCCGTGGAGAGGGCTTGGCGGTAGGCTGTCTGAGAAAATCGGGCAGCTTCCC GGTTTGCGGAAGATCAGCTTCCACGACAATGCGATTGGTGGGACGATCCCTTGGTCATTGGGGTTTCTACGTCACCTCAGAGGTGTTCATCTCTTCAACA ATCAGCTTCGGGGATCGATCCCTCCTTCTATCGGTAACTGTCCTGTTCTTCAAGCTTTCGATGTGAGTAACAATTCGCTCACTGGCGCGGTTCCCTGGAG TTTTGTGAAGTCGAACAGGCTGTTCAGGCTGAATCTTAGCCACAATGGCTTGTCTGGTTGGATCCCCGGTAGTCTCTTTAGCTCTTCTTCTCTGGTTTTT CTGTCTCTTGACCATAATAATCTATCCGGTTCGATCCCGGAAGCTGAAATTAGCAGTAGTAATCGGCTCCAAAAGCTAGATTTGTCTAACAATGCCCTCA ATGGGACGATTCCGGAAAGCTTTTCGAATCTTTCCTCTTTAGTCTGGTTGAATCTGGAATCGAATCTCCTTGAAGGCCAAATCCTGGAATCTGTACTAGA TAGAATGCACAACCTCACAGTGCTTAACCTGAAAGACAACAGATTCCAAGGCCAGATTCCACCAACTTTATCCAACTTATCCGCCATTACCCAGCTTGAC CTGTCTCAGAACAATTTCAGTGGAGAGATTCCAACTTCCCTTTCTCAGATGTCCAATCTCAACTCATTCAATGTCTCCTACAACAATCTCTCCGGACCCG TCCCTTCGATCCTGGCCCGAAAGTTCAATTCGAGCTCTTTCGTGGGAAATCTTCAGCTTTGTGGATACAGTCCTTCAACTCCTTGTATTTCACCTGCACC AAGTATTCCTCCTGCTCCATCACCGGAGTCTCCTACGAATCACCACCATGGTCGAAAGCTAAGCACACGAGATCTTATCCTTATAGTAGCAGGATCCATA GGGGGTTTTCTGCTTCTACTTTGCTGCTGCTTGCTTTGCTGTCTGATGAGGAGAAGAAAAAGCAGCAGCTCAAAGGAGAAGAGTGGTGTTGGTATAGCTG CTGCTGCCACTGGTGGTAAATCGGAGAAGGCAGCCGATGTCGAATCTGGAGGCGAAATGGGTGGGAAGTTGGTCCATTTCGACGGGCCTTTCATGTTCAC GGCGGATGATTTGCTCTGTGCAACTGCGGAGATCATGGGGAAGAGCACTTATGGAACTGCATACAAGGCAACGTTAGAAGATGGGAATCAAGTTGCAGTG AAGAGATTGAGAGAGAAGATAACAAAGGGAGAACGCGAATTCGAGACCGAAGCTGGAGCTATTGGCAAGATTAGACATCCGAATCTGCTATCTCTTCGAG CTTATTACCTCGGTCCCAAAGGCGAGAAGCTGCTAGTGTTCGATTACATGCCTAGAGGAAGCCTCTCATCCTTCCTCCATGCTCGTGGACCTGAGACGAC GATCGATTGGCCAACAAGGATGAACATAATCACAGGAATCACACGAGGACTGAGCCATCTCCATACAAGAGAGAACATAATCCACGGGAATCTCACCTCA AGCAACGTGCTCTTAGACGAGCAGACAAACGCAAGCATCGCCGACTTCGGAATCTCCAGGCTGATGACTGCCGCCGCGGCCACGAACGTGATCGCCACAG CGGGAGCGCTAGGATACAGAGCACCGGAGCTTTCAAAGCTGAAGAATGCCAGCACGAAGACAGACGTTTATAGCCTCGGAGTGATCATCCTCGAGCTTCT GACAGGGAAATCCCCTGCGGAGCCGACTAACGGACAGGATCTTCCCCGGTGGGTGGCTTCCATCGTGAAGGAAGAGTGGACAAACGAAGTGTTCGATCTG GAGATTTCCAAGGACTTACCAACTATCGGCGACGAGCTACTCAACACGCTGAAGTTGGCATTGCATTGCGTCGATCCGTCGCCGTCGGCGAGACCTGAGG TTGAGCAAGTTCTTCACCAGCTGGAGGACATCAAGCCAGAGGTGGCCGTGCCGGCGGCGGCGCCTGCTGAAACAACAGATTAG
AA sequence Show only first row Show all	>Lus10014235 pacid=23152892 polypeptide=Lus10014235 locus=Lus10014235.g ID=Lus10014235.BGIv1.0 annot-version=v1.0 MERHTLFPLFFLFSILLVSATSQKWDGVIVTQSDYQSLRAIKNELVDLRGALRSWNDTNGVGVCSGGWAGIKCAKGQVILIQLPWRGLGGRLSEKIGQLP GLRKISFHDNAIGGTIPWSLGFLRHLRGVHLFNNQLRGSIPPSIGNCPVLQAFDVSNNSLTGAVPWSFVKSNRLFRLNLSHNGLSGWIPGSLFSSSSLVF LSLDHNNLSGSIPEAEISSSNRLQKLDLSNNALNGTIPESFSNLSSLVWLNLESNLLEGQILESVLDRMHNLTVLNLKDNRFQGQIPPTLSNLSAITQLD LSQNNFSGEIPTSLSQMSNLNSFNVSYNNLSGPVPSILARKFNSSSFVGNLQLCGYSPSTPCISPAPSIPPAPSPESPTNHHHGRKLSTRDLILIVAGSI GGFLLLLCCCLLCCLMRRRKSSSSKEKSGVGIAAAATGGKSEKAADVESGGEMGGKLVHFDGPFMFTADDLLCATAEIMGKSTYGTAYKATLEDGNQVAV KRLREKITKGEREFETEAGAIGKIRHPNLLSLRAYYLGPKGEKLLVFDYMPRGSLSSFLHARGPETTIDWPTRMNIITGITRGLSHLHTRENIIHGNLTS SNVLLDEQTNASIADFGISRLMTAAAATNVIATAGALGYRAPELSKLKNASTKTDVYSLGVIILELLTGKSPAEPTNGQDLPRWVASIVKEEWTNEVFDL EISKDLPTIGDELLNTLKLALHCVDPSPSARPEVEQVLHQLEDIKPEVAVPAAAPAETTD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10014235 [exp]	0	1
AT5G55830			Concanavalin A-like lectin pro...		Lus10016620 [exp]	2.6	0.9695
AT5G27550			P-loop containing nucleoside t...		Lus10004487 [exp]	2.8	0.9726
AT1G65710			unknown protein		Lus10010952 [exp]	3.0	0.9713
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	3.5	0.9703
AT3G20150			Kinesin motor family protein (...		Lus10016589 [exp]	3.5	0.9715
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10009434 [exp]	3.5	0.9696
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10034060 [exp]	4.5	0.9690
AT1G72250			Di-glucose binding protein wit...		Lus10013714 [exp]	6.7	0.9691
					Lus10037590 [exp]	7.4	0.9703
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10004295 [exp]	7.5	0.9658

Compare expression of checked genes

Lus10014235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.