Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56100 687 / 0 IMK3, MRLK meristematic receptor-like kinase (.1) AT3G51740 484 / 1e-159 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT2G26730 302 / 5e-92 Leucine-rich repeat protein kinase family protein (.1) AT5G63930 304 / 3e-89 Leucine-rich repeat protein kinase family protein (.1) AT5G62230 289 / 1e-84 ERL1 ERECTA-like 1 (.1.2) AT5G05160 274 / 8e-82 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G17230 280 / 9e-81 Leucine-rich receptor-like protein kinase family protein (.1) AT5G07180 277 / 2e-80 ERL2 ERECTA-like 2 (.1) AT3G02880 270 / 2e-80 Leucine-rich repeat protein kinase family protein (.1) AT2G26330 275 / 2e-79 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022678 [exp] 1270 / 0 AT3G51740 885 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014235 [exp] 890 / 0 AT3G51740 933 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022679 [exp] 885 / 0 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10012225 [exp] 645 / 0 AT3G51740 679 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10019113 [exp] 305 / 4e-93 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 300 / 4e-91 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 295 / 4e-89 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021673 [exp] 294 / 5e-89 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031108 [exp] 296 / 5e-87 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G126300 [exp] 920 / 0 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G104300 [exp] 899 / 0 AT3G51740 996 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.010G183400 [exp] 849 / 0 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.018G074300 [exp] 310 / 5e-95 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 297 / 2e-90 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 295 / 9e-90 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.012G139000 [exp] 300 / 5e-87 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.017G130600 [exp] 282 / 8e-85 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 282 / 2e-84 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.006G220100 [exp] 286 / 1e-83 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014236 pacid=23152900 polypeptide=Lus10014236 locus=Lus10014236.g ID=Lus10014236.BGIv1.0 annot-version=v1.0 ATGGAACTCAATGGTTCCAGCATCGTCACCGACTCGTTCTTCTTCTTTACACTACTAGCTTTACTACTAGCCTCACCACTTGCTTCCTCCTCCCAGAAAT GGGACGGAGTTCTGGTAACCCAATCTGACTACCAGTCTCTCCGAGCCATTAAAAACGAACTCGTTGATCTTCGGGGAGTCCTCCGGAGCTGGAACGAGAG TGGAGGGGAGGACGGAGTCTGTTCCGGTGGGTGGGCTGGAATTAAATGTGTCAAGGGACGAGTCATAGCCATCCAGCTTCCCTGGAGAGGGCTGGGAGGG AAGATCTCCGAGACCATCGGGCAGCTACCACAGCTGAGAAGGATCAGCTTGCACGACAATGTGATCGGAGGAAGCATCCCTACGTCTATCGGCTTTCTAC GGAACCTTAGAGGTGTTTACCTCTTCAACAACCAGCTTCGTGGATCCATCCCTCCTTCGATCGGTAACTGCTCCTTTCTTCAAGCTCTTGATGTTGGTAA CAATTCGCTGACCGGTCCAATTCCTCCTAGTTTAGCGAATTTAACGACGTTGTATAGGTTGAACCTGAGCCACAATTCGTTCACCGGACCTATCCCGGTT GGTTATTCCACCTCTGCTTCTCTAGTTTATCTAGCTCTTGAGCATAATAATTTGTCTGGTTCCATCCCTGATTCTTGGTTAGGAAAAACCAGTAAGAACC CTCATCAGCTCGAGTTCTTGACCCTAAATCATAACCAGATAACCGGAATCATACCCGATGAACTAGGGAGTGTAACCAGTCTCCAAAGGCTAGATCTTTC CAACAATGATATCAATGGAACCATCCCTTCCAGCTTTCCCAATCTAACCTCTCTAGTATGGCTGAATCTCGAGGGAAATCGCCTTCATGGCCAGATCCCG GAATCTCTAGACAGGATACTAAACCTCACAGTGCTTAACCTGAAAGGCAACAACTTCAGCGGAAGAATTCCGGATTCCCTTTCTCATCTGTCGAATCTCA ATTCTTTCAACGTCTCCTACAACAGCCTCTCCGGACCTGTCCCGGCTCTTCTGGTCAGAAAGTTCGGCTCGAGCTCCTTCGTCGGGAATCTTCAACTATG TGGCTATAGTTCTTCAGTCCCTTGTCCGTCATCATCAGCGCCATCTCCATCACCCGAGTCTTCGACGAATGCCAGCAGCAGCAAGATTAGCACCAAGTAC CTAATCCTTATCATAGCAGGATCCGTGGTGGGCTTTCTTCTTCTACTATGTTGCTGTTTGCTTTGCTGTTTGATGAGGAAGAGAGGTGGGTCGTCAAAGC CAAAGAATGCTAACATCACAACCCACGGAGCCTCTAAAAAACCAGAGAAGGTAGCTGCATCTGCTGTCTCCCAACCTGGCAACGAAATGGGTGGGAAATT GGTCCATTTCGACGGGCCATTCATCTTCACAACGGATGATTTGCTCTGTGCAACTGCAGAGATCATGGGGAAGAGCTCATATGGAACTGCATACAAGGCA ACATTAGAAGATGGGAATCAAGTTGCTGTGAAAAGATTGAGAGAGAAGACAACAAAGGGGGAGCATGAATTCGAAAGCCAAGTTTCAGCAATGGGGAAGA TTCGCCACCCAAATCTGCTAGCTCTTCGAGCTTACTACCTGGGGCCGAAAGGAGAGAAGCTGCTGGTTTTCGACTACATGCCTAGAGGAAGCCTTTCATC CTTCCTCCATGCTCATGCCCCTGAGAGCATTATCAATTGGCCAACAAGGATGAACATAATCACTGGAATTGCTCGAGGACTGAACCATCTCCACACAAAA GAGAACACAATCCATGGAAATCTTACCTCCAGCAACGTACTCCTCGACGAGCAGTCTAACGCACACATCGCCGACTTCGGGATCTCCAGTCTCATGACGC TAGCAGCGGCGACGAATGTGATCGCCACAGCCGGGACCCTAGGGTATCGAGCGCCGGAGCTGTCGAAGCTGAAGAACGTCAGCACAAAGACGGACGTCTA CAGCCTCGGAGTGATAATTCTGGAGCTGCTGACGGGGAAATCCCCCGGGGAGCCGATCAGCGGCATGGATTTGCCTCGCTGGGTGGCTTCAGTGATGAAG GAAGAGTGGACGAATGAAGTTTTCGATTTGGAGATCTTGAAAGACTCGCCGGAAAACGGCGATGAGCTCCTCAACACTCTGAAGATGGCTTTGCATTGCG TCGATCCGTCGCCGTCGGCTAGGCCGGAGGTTGAGCAGATTCTTGAGCAGCTGGAGGAGATCAAACCGGAGCTGGCGACGTCAGCTCATCACAATCAAGC TGAGATTGACGACGGCGACGGTGTCAAATCCTCATTACCTACTACCGATTAG
AA sequence Show only first row Show all	>Lus10014236 pacid=23152900 polypeptide=Lus10014236 locus=Lus10014236.g ID=Lus10014236.BGIv1.0 annot-version=v1.0 MELNGSSIVTDSFFFFTLLALLLASPLASSSQKWDGVLVTQSDYQSLRAIKNELVDLRGVLRSWNESGGEDGVCSGGWAGIKCVKGRVIAIQLPWRGLGG KISETIGQLPQLRRISLHDNVIGGSIPTSIGFLRNLRGVYLFNNQLRGSIPPSIGNCSFLQALDVGNNSLTGPIPPSLANLTTLYRLNLSHNSFTGPIPV GYSTSASLVYLALEHNNLSGSIPDSWLGKTSKNPHQLEFLTLNHNQITGIIPDELGSVTSLQRLDLSNNDINGTIPSSFPNLTSLVWLNLEGNRLHGQIP ESLDRILNLTVLNLKGNNFSGRIPDSLSHLSNLNSFNVSYNSLSGPVPALLVRKFGSSSFVGNLQLCGYSSSVPCPSSSAPSPSPESSTNASSSKISTKY LILIIAGSVVGFLLLLCCCLLCCLMRKRGGSSKPKNANITTHGASKKPEKVAASAVSQPGNEMGGKLVHFDGPFIFTTDDLLCATAEIMGKSSYGTAYKA TLEDGNQVAVKRLREKTTKGEHEFESQVSAMGKIRHPNLLALRAYYLGPKGEKLLVFDYMPRGSLSSFLHAHAPESIINWPTRMNIITGIARGLNHLHTK ENTIHGNLTSSNVLLDEQSNAHIADFGISSLMTLAAATNVIATAGTLGYRAPELSKLKNVSTKTDVYSLGVIILELLTGKSPGEPISGMDLPRWVASVMK EEWTNEVFDLEILKDSPENGDELLNTLKMALHCVDPSPSARPEVEQILEQLEEIKPELATSAHHNQAEIDDGDGVKSSLPTTD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10014236 [exp]	0	1
AT4G13370			Plant protein of unknown funct...		Lus10043255 [exp]	3.6	0.9536
AT4G35730			Regulator of Vps4 activity in ...		Lus10041836 [exp]	7.1	0.9444
AT4G13370			Plant protein of unknown funct...		Lus10019398 [exp]	8.3	0.9497
AT5G27550			P-loop containing nucleoside t...		Lus10029914 [exp]	9.2	0.9523
AT5G39900			Small GTP-binding protein (.1)		Lus10007250 [exp]	12.7	0.8997
AT1G04030			unknown protein		Lus10003613 [exp]	13.3	0.9355
AT4G35730			Regulator of Vps4 activity in ...		Lus10028383 [exp]	14.8	0.9391
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10034620 [exp]	15.0	0.9158
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10019720 [exp]	15.2	0.9457
AT5G01420			Glutaredoxin family protein (....		Lus10028742 [exp]	15.9	0.9373

Compare expression of checked genes

Lus10014236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.