Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08780 298 / 2e-100 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022677 [exp] 562 / 0 AT3G08780 313 / 2e-106 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G126200 [exp] 316 / 1e-107 AT3G08780 263 / 6e-87 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014237 pacid=23152920 polypeptide=Lus10014237 locus=Lus10014237.g ID=Lus10014237.BGIv1.0 annot-version=v1.0 ATGGCCGCCGACGATCTCCAGCTACAGAAAGTAGCGATCTTTGGCCCCACATTAGCCTCCATGATGCAGCGTTTCTCCTCCGCAATCGGCGACGTGGACG GCCTTCTCTTCGGCCACGTAACGCACCTCGCTCCAACTCTCTCCGACGACGATCCCCCCCAAACCTCCTCCGATTCGCCGGAGCTAGTCGCCACAATCAC GTCCTTCATCTGCCCCAACTCAACCTTCTCCTTCTACGACTCCCTCGGCCGCGTCGATTCGCCCTCCCTCCAGCGGCTGCTCCTCGCCGCACATCCCGAA CGCCACCGCCGCCACCTCCTCGGCTGGTTCTCCGCTCGGCGGAGAACGCCGATTCGGCCTTCGATGCGTGAGTTCTCCGTCACGCACTGCCTCTCCACCA AATCGGAGTTGTCTTCCCCAATCGAGAGTCTGAGTAGTCTGGTGAATTTCGCTCCCTGTTTGTTTCTCTTGTTTGCAACTCCGACGCAAGAGCAATTGAT TCACACGCACGACTATAGGGCTTACCAGTTTGGTGTGTCGAGGAAGCGATTCGAGTCTAAGTCGGTTGATATAGTGAACATTGGCCCTGCGTTTCGAGTG GATTACGGATCCTTCACCCCTAATTCGCCGTTTCCGATGTTGAGCTGCGATTTGAGGAGTTCGTCGGCGATGAATGAGGATAATAGGAGTGAGGAAGGTA GTTTGGGGGAGATGAAGAAAGTGGCCAAGGATCAGAAGGAGCTGGATATGTGTGCAGAAGGATATGGAGTTGCTAGCTTGAGTAGATTGATGGGTGAGGA GGCGACTGGTTATACAGCAGGATTGGAGGATATGTATGATAAGATGTTAGTAAAGATTGAGAGCCTGGTTAGACAAGTGGAGAGTAGCAATGCCAAGGTT CTCCAAATGGAGAATTACAACCGGAAGCTGAGGTACAAAGTTGCAAAAGGTGGAGTTGAATGA
AA sequence Show only first row Show all	>Lus10014237 pacid=23152920 polypeptide=Lus10014237 locus=Lus10014237.g ID=Lus10014237.BGIv1.0 annot-version=v1.0 MAADDLQLQKVAIFGPTLASMMQRFSSAIGDVDGLLFGHVTHLAPTLSDDDPPQTSSDSPELVATITSFICPNSTFSFYDSLGRVDSPSLQRLLLAAHPE RHRRHLLGWFSARRRTPIRPSMREFSVTHCLSTKSELSSPIESLSSLVNFAPCLFLLFATPTQEQLIHTHDYRAYQFGVSRKRFESKSVDIVNIGPAFRV DYGSFTPNSPFPMLSCDLRSSSAMNEDNRSEEGSLGEMKKVAKDQKELDMCAEGYGVASLSRLMGEEATGYTAGLEDMYDKMLVKIESLVRQVESSNAKV LQMENYNRKLRYKVAKGGVE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08780			unknown protein		Lus10014237 [exp]	0	1
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032155 [exp]	1.0	0.9338
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10031309 [exp]	2.8	0.9088
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10007274 [exp]	4.2	0.9111
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030820 [exp]	4.5	0.9115
AT4G39820			Tetratricopeptide repeat (TPR)...		Lus10016067 [exp]	5.7	0.9006
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10036999 [exp]	5.9	0.9068
AT2G37110			PLAC8 family protein (.1)		Lus10019922 [exp]	9.2	0.9027
AT2G20760			Clathrin light chain protein (...		Lus10018480 [exp]	12.1	0.9006
AT5G16510		RGP5	reversibly glycosylated protei...		Lus10020379 [exp]	14.4	0.8928
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10019323 [exp]	15.4	0.8842

Compare expression of checked genes

Lus10014237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.