Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38320 476 / 5e-168 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT5G01620 367 / 1e-124 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT2G40320 341 / 1e-114 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT2G40150 335 / 2e-112 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT1G73140 327 / 2e-109 TBL31 Plant protein of unknown function (DUF828) (.1) AT3G11030 326 / 2e-108 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT3G55990 320 / 2e-105 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT5G01360 290 / 9e-95 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G40160 285 / 1e-92 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G78710 229 / 6e-72 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022676 [exp] 725 / 0 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10009839 [exp] 324 / 1e-107 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10040953 [exp] 322 / 7e-107 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10002858 [exp] 315 / 5e-106 AT5G01620 510 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Lus10028974 [exp] 316 / 2e-104 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10030396 [exp] 315 / 5e-104 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10012229 [exp] 310 / 7e-104 AT5G01620 509 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Lus10007497 [exp] 314 / 1e-103 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10017428 [exp] 310 / 6e-103 AT2G40320 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G125500 [exp] 544 / 0 AT2G38320 541 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Potri.016G125600 [exp] 361 / 3e-122 AT5G01620 657 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Potri.010G184000 [exp] 334 / 9e-112 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.008G073300 [exp] 332 / 4e-111 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G187600 [exp] 315 / 2e-103 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.001G376700 [exp] 308 / 6e-102 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.008G069900 [exp] 308 / 7e-101 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G119100 [exp] 304 / 3e-100 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.010G187500 [exp] 304 / 4e-100 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 289 / 5e-94 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10014238 pacid=23152923 polypeptide=Lus10014238 locus=Lus10014238.g ID=Lus10014238.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCGATGACAGTAGCATCACAGGTCAAAGGCAGCAGTAGCTTTGTTCTGTCTCCTTTCATGACAATGGGAGTTAGGAGCACTTTCCATTCCT TGGTAGCTCTGCTCCTCACTTTCCTCCTCGTAGTTGCCGTTTACCTCACCCAAACCCGCTCCAACCTCCTCGTCGAGGATGGTAGTTTAGCTTCCTCGTC GGTGGTGTCAAGGTGCAACCTGTTTGAGGGGAAGTGGGTTTTCGACAACCGGTCGTACCCTTTGTACAAGGAGAAAGATTGCACCTTCATGTCTGATCAG CTGGCATGCCAGAAGTTCGGGAGGAAGGATTTGGAGTATCAGAACTGGAGGTGGCAGCCAAACCAGTGCGACATTCCCAGATTTAATGCTACAGTGTTGC TGGAGAGGCTAAGGAACAAGAGGCTAGTGTACGTTGGAGATTCATTGAACAGAGGCCAATGGGTTTCAATGGTTTGTCTTGTTGATTCTTCAATTCCAAC TGGACTCAAGTCTATGGAGCAGAAGCTCAATGGCTCGTTGATGGTCTTCAATGTTAAGGAATACAACGCGACAATAGAGTTCTACTGGGCGCCGTTGCTA GTGGAATCCAACTCCGACGACCCGGTGAGCCACCGGGTTCCTGATCGGATCGTCCGAGTGCAGGGTATCGAAAAGCACGCCAAGTGGGGTTCGTTTGCGG ACCCTGACGACGCAGTAGTGAAGGAAGTGAAGATGCCACGAGTCTACGAAATGGCTCTTCAGACTTGGGCCGATTGGTTGGAAGTCCATGTCAATCGGAC CAAAACCCAACTTTTCTTCGTCAGCATGTCACCAACCCATGAAGTAGCAAAGGAATGGGGAGGGGGAGATCTAGACCAAAACTGCTACAGCGAAACGGTA CCGATATTCGAACAAGGGTACAGAGGGAAATCCACCTGCAAAGAGATGATACAAGTGGTTGAATCAGTTCTTGATGGGTTGAAAACCAGAGGGATGAACA TAGAGATGATCAACATAACACAGCTTACAGAGTACAGGAAAGAAGGCCACCCTTCGATCTACAGGAAGCAATGGGAGCCATTGAAAGAGGAACAGAGATT GAATCCCAGTAGCTATGCAGATTGCATACACTGGTGTCTACCTGGTGTCCCTGATGTTTGGAATGAGATCCTTTATAGTTACATCATGGGGTTGTGA
AA sequence Show only first row Show all	>Lus10014238 pacid=23152923 polypeptide=Lus10014238 locus=Lus10014238.g ID=Lus10014238.BGIv1.0 annot-version=v1.0 MAAAMTVASQVKGSSSFVLSPFMTMGVRSTFHSLVALLLTFLLVVAVYLTQTRSNLLVEDGSLASSSVVSRCNLFEGKWVFDNRSYPLYKEKDCTFMSDQ LACQKFGRKDLEYQNWRWQPNQCDIPRFNATVLLERLRNKRLVYVGDSLNRGQWVSMVCLVDSSIPTGLKSMEQKLNGSLMVFNVKEYNATIEFYWAPLL VESNSDDPVSHRVPDRIVRVQGIEKHAKWGSFADPDDAVVKEVKMPRVYEMALQTWADWLEVHVNRTKTQLFFVSMSPTHEVAKEWGGGDLDQNCYSETV PIFEQGYRGKSTCKEMIQVVESVLDGLKTRGMNIEMINITQLTEYRKEGHPSIYRKQWEPLKEEQRLNPSSYADCIHWCLPGVPDVWNEILYSYIMGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10014238 [exp]	0	1
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10024272 [exp]	1.7	0.9823
AT5G22400			Rho GTPase activating protein ...		Lus10014213 [exp]	3.5	0.9728
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10030396 [exp]	3.7	0.9771
AT5G22400			Rho GTPase activating protein ...		Lus10022700 [exp]	3.9	0.9708
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Lus10015298 [exp]	4.0	0.9677
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Lus10034267 [exp]	5.1	0.9637
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10013611 [exp]	6.7	0.9674
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10017863 [exp]	6.9	0.9754
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	9.2	0.9688
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10031650 [exp]	10.8	0.9510

Compare expression of checked genes

Lus10014238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.