Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24020 60 / 7e-12 MLP423 MLP-like protein 423 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001037 [exp] 305 / 6e-106 AT1G24020 68 / 7e-14 MLP-like protein 423 (.1.2) Lus10001036 [exp] 301 / 3e-102 AT1G24020 68 / 2e-13 MLP-like protein 423 (.1.2) Lus10003451 [exp] 190 / 1e-62 AT1G24020 73 / 7e-17 MLP-like protein 423 (.1.2) Lus10001041 [exp] 189 / 1e-62 AT1G24020 64 / 2e-13 MLP-like protein 423 (.1.2) Lus10008023 [exp] 192 / 3e-62 AT1G63460 265 / 9e-91 glutathione peroxidase 8 (.1) Lus10001042 [exp] 187 / 2e-61 AT1G24020 69 / 5e-15 MLP-like protein 423 (.1.2) Lus10000474 [exp] 171 / 2e-55 AT1G24020 64 / 2e-13 MLP-like protein 423 (.1.2) Lus10001032 [exp] 102 / 8e-28 AT1G24020 44 / 1e-05 MLP-like protein 423 (.1.2) Lus10001033 [exp] 96 / 2e-25 AT1G24020 42 / 6e-05 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096000 [exp] 54 / 8e-10 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2) Potri.003G088100 [exp] 39 / 0.0005 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10014241 pacid=23164753 polypeptide=Lus10014241 locus=Lus10014241.g ID=Lus10014241.BGIv1.0 annot-version=v1.0 ATGGAAGTTCATATGTTTTCGTCTGCAAACGATGTTTGGAGTGCCATCACTGCGGCCACAGCTGTTTATCCCAGGGCCATACGTAACCTCTACCAGCAGA TCGCAGTTGTTGCTGGCGACGGTTACACCGCAGGATCTACTCGCACCATAACCTTCGGCCCTGGTTTCAGTCGTGTTGTGCAGAAGGGGACCGAGAAGAT CATTGACGTTGACAATGGCGATTTGATTATTGAGTCGATCTTTAGCTACGATGGAGGGTTCGTGCCCATGTTGTTCGACACCTTCCGCATGAAAATAATT GTGGTAAAATCAGCTGCCCAAATCAGAGCTCCTGGGTGCACACTTAAGTTGGAGTTCGATTACGGTAGATCGGAAGGCAACGCTGACATAACCTACTTCA AGAATGTGATGACAGATGCTTACAGGGATCTGGACAACTACCTTAGGACCAACAGCCCCAGTGAAAGACGATGGTGA
AA sequence Show only first row Show all	>Lus10014241 pacid=23164753 polypeptide=Lus10014241 locus=Lus10014241.g ID=Lus10014241.BGIv1.0 annot-version=v1.0 MEVHMFSSANDVWSAITAATAVYPRAIRNLYQQIAVVAGDGYTAGSTRTITFGPGFSRVVQKGTEKIIDVDNGDLIIESIFSYDGGFVPMLFDTFRMKII VVKSAAQIRAPGCTLKLEFDYGRSEGNADITYFKNVMTDAYRDLDNYLRTNSPSERRW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10014241 [exp]	0	1
					Lus10003448 [exp]	2.4	0.8667
AT4G35160			O-methyltransferase family pro...		Lus10007035 [exp]	4.6	0.8197
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029185 [exp]	16.9	0.8586
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10032903 [exp]	19.2	0.7635
					Lus10038430 [exp]	19.4	0.8030
AT5G15110			Pectate lyase family protein (...		Lus10033018 [exp]	20.0	0.7974
AT3G12690		AGC1.5	AGC kinase 1.5 (.1.2.3)		Lus10001757 [exp]	20.5	0.7785
AT4G10265			Wound-responsive family protei...		Lus10018529 [exp]	23.7	0.8558
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10008443 [exp]	25.3	0.7279
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10002356 [exp]	37.3	0.8292

Compare expression of checked genes

Lus10014241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.